1 Response_reg#1
3-112 aa · 110 aa · 47.8% of protein
Raw token
Response_reg:3:1.02e-34:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC13_RS02550
Response regulator OmpR family
Agathobacter rectalis · GCF_003438175
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003438175#DXC13_RS02550Stable P2CS identifier used across views.
GenomeGCF_003438175Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 230 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-226 aa · 77 aa · 33.5% of protein
Raw token
Trans_reg_C:150:1.53e-30:226:77:77- Raw architecture: Response_reg:3:1.02e-34:112:111:111#Trans_reg_C:150:1.53e-30:226:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003438175::NZ_QSTI01000003.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span13341-15403Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC13_02550RefSeq proteinWP_012740951.1
Context group ID
GCF_003438175::NZ_QSTI01000003.1::G00025Context members
DXC13_RS02550DXC13_RS02555
Partner locus tags
DXC13_RS02550DXC13_RS02555
Partner old locus tags
DXC13_02550DXC13_02555
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012740951.1Primary protein accession used for annex mappings.
UniProt accessionC4Z9H9Primary UniProt accession resolved in the annex database.
UniProt IDC4Z9H9_AGARVDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC13_RS02550Primary locus identifier stored in the genes table.
Old locus tagDXC13_02550Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSTI01000003.1Sequence record reported by the local genomic context database.
Genomic interval13 341-14 033 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span13 341-15 403 ntGCF_003438175::NZ_QSTI01000003.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438175::NZ_QSTI01000003.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSTI01000003.1All displayed genes belong to this local TCS context.
Neighborhood span13 341-15 403 nt2 063 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 341 nt15 403 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC13_RS02550GCF_003438175#DXC13_RS02550
RROmpRCurrent focus
13 341-14 033 nt · Forward (+)
DXC13_RS02555GCF_003438175#DXC13_RS02555
HKClassic
14 030-15 403 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020605#EUBREC_RS00110Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1199873
Simplified PFAM architecture for RROC_1199873
PFAM domain coverage: 186 / 230 aa (80.9%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[150-225]
- Domain count: 2
- Matched identifier: RROC_1199873
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; Trans_reg_C 150-225 ; Trans_reg_C 150-225
Cluster members and taxonomy
Representative gene: GCF_000020605#EUBREC_RS00110
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003438175
AssemblyASM343817v1 · Scaffoldhaploid
Genome composition3 350 682 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 94 · HK 41 · RR 51CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key