1 Response_reg#1
4-112 aa · 109 aa · 46.2% of protein
Raw token
Response_reg:4:3.12e-38:112:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC25_RS02800
Response regulator OmpR family
Enterococcus faecalis · GCF_003438055
ClassRRTypeOmpRLength236 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003438055#DXC25_RS02800Stable P2CS identifier used across views.
GenomeGCF_003438055Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 236 aa (78.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-231 aa · 77 aa · 32.6% of protein
Raw token
Trans_reg_C:155:4.21e-36:231:77:77- Raw architecture: Response_reg:4:3.12e-38:112:109:111#Trans_reg_C:155:4.21e-36:231:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003438055::NZ_QSSZ01000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span559070-561552Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC25_02800RefSeq proteinWP_002360193.1
Context group ID
GCF_003438055::NZ_QSSZ01000001.1::G00005Context members
DXC25_RS02800DXC25_RS02805
Partner locus tags
DXC25_RS02800DXC25_RS02805
Partner old locus tags
DXC25_02800DXC25_02805
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002360193.1Primary protein accession used for annex mappings.
UniProt accessionA0ABC9P5F9Primary UniProt accession resolved in the annex database.
UniProt IDA0ABC9P5F9_ENTFLDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC25_RS02800Primary locus identifier stored in the genes table.
Old locus tagDXC25_02800Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSSZ01000001.1Sequence record reported by the local genomic context database.
Genomic interval559 070-559 780 nt711 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span559 070-561 552 ntGCF_003438055::NZ_QSSZ01000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438055::NZ_QSSZ01000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSSZ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span559 070-561 552 nt2 483 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
559 070 nt561 552 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC25_RS02800GCF_003438055#DXC25_RS02800
RROmpRCurrent focus
559 070-559 780 nt · Forward (+)
DXC25_RS02805GCF_003438055#DXC25_RS02805
HKClassic
559 777-561 552 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147255#HMPREF9511_RS13915Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0988453
Simplified PFAM architecture for RROC_0988453
PFAM domain coverage: 186 / 236 aa (78.8%)
1 aa236 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[156-231]
- Domain count: 2
- Matched identifier: RROC_0988453
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 156-231 ; Trans_reg_C 156-231
Cluster members and taxonomy
Representative gene: GCF_000147255#HMPREF9511_RS13915
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 351 · GCF_003438055
AssemblyASM343805v1 · Scaffoldhaploid
Genome composition2 665 772 bp · 37,5% GCEnterococcus faecalis
Signal transduction countsGenes 29 · HK 13 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key