1 Response_reg#1
9-136 aa · 128 aa · 44.8% of protein
Raw token
Response_reg:9:8.18e-29:136:128:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD28_RS09940
Response regulator NarL family
Bifidobacterium longum · GCF_003437455
ClassRRTypeNarLLength286 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437455#DXD28_RS09940Stable P2CS identifier used across views.
GenomeGCF_003437455Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length286 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 286 aa (65.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa286 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
223-280 aa · 58 aa · 20.3% of protein
Raw token
HTH_LUXR:223:8.51e-25:280:58:58- Raw architecture: Response_reg:9:8.18e-29:136:128:111#HTH_LUXR:223:8.51e-25:280:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437455::NZ_QSQH01000011.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span44914-48251Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD28_09945RefSeq proteinWP_117701462.1
Context group ID
GCF_003437455::NZ_QSQH01000011.1::G00003Context members
DXD28_RS09940DXD28_RS09945
Partner locus tags
DXD28_RS09940DXD28_RS09945
Partner old locus tags
DXD28_09945DXD28_09950
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117701462.1Primary protein accession used for annex mappings.
UniProt accessionA0AB37LEE0Primary UniProt accession resolved in the annex database.
UniProt IDA0AB37LEE0_BIFLNDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD28_RS09940Primary locus identifier stored in the genes table.
Old locus tagDXD28_09945Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSQH01000011.1Sequence record reported by the local genomic context database.
Genomic interval44 914-45 774 nt861 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span44 914-48 251 ntGCF_003437455::NZ_QSQH01000011.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437455::NZ_QSQH01000011.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSQH01000011.1All displayed genes belong to this local TCS context.
Neighborhood span44 914-48 251 nt3 338 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 914 nt48 251 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD28_RS09940GCF_003437455#DXD28_RS09940
RRNarLCurrent focus
44 914-45 774 nt · Reverse (-)
DXD28_RS09945GCF_003437455#DXD28_RS09945
HKClassic
45 858-48 251 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437455#DXD28_RS09940The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0590668
Simplified PFAM architecture for RROC_0590668
PFAM domain coverage: 183 / 286 aa (64.0%)
1 aa286 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-135] | GerE[225-280]
- Domain count: 2
- Matched identifier: RROC_0590668
- Positioned domains: Response_reg 9-135 ; Response_reg 9-135 ; GerE 225-280 ; GerE 225-280
Cluster members and taxonomy
Representative gene: GCF_003437455#DXD28_RS09940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003437455
AssemblyASM343745v1 · Scaffoldhaploid
Genome composition2 350 747 bp · 60,5% GCBifidobacterium longum
Signal transduction countsGenes 23 · HK 10 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key