1 Response_reg#1
20-120 aa · 101 aa · 40.4% of protein
Raw token
Response_reg:20:1.01e-19:120:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC71_RS09525
Response regulator LytTR family
Bifidobacterium pseudocatenulatum · GCF_003437155
ClassRRTypeLytTRLength250 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003437155#DXC71_RS09525Stable P2CS identifier used across views.
GenomeGCF_003437155Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length250 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage193 / 250 aa (77.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa250 aa
Domain-by-domain annotation2 items
2 LytTR#2
151-242 aa · 92 aa · 36.8% of protein
Raw token
LytTR:151:8.38e-20:242:97:98- Raw architecture: Response_reg:20:1.01e-19:120:106:111#LytTR:151:8.38e-20:242:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003437155::NZ_QSRR01000010.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span31763-32515Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC71_09540RefSeq proteinWP_117656808.1
Context group ID
GCF_003437155::NZ_QSRR01000010.1::G00008Context members
DXC71_RS09525
Partner locus tags
DXC71_RS09525
Partner old locus tags
DXC71_09540
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117656808.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC71_RS09525Primary locus identifier stored in the genes table.
Old locus tagDXC71_09540Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRR01000010.1Sequence record reported by the local genomic context database.
Genomic interval31 763-32 515 nt753 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span31 763-32 515 ntGCF_003437155::NZ_QSRR01000010.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437155::NZ_QSRR01000010.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRR01000010.1All displayed genes belong to this local TCS context.
Neighborhood span31 763-32 515 nt753 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
31 763 nt32 515 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXC71_RS09525GCF_003437155#DXC71_RS09525
RRLytTRCurrent focus
31 763-32 515 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437075#DXC75_RS10030Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0724133
Simplified PFAM architecture for RROC_0724133
PFAM domain coverage: 192 / 250 aa (76.8%)
1 aa250 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[19-121] | LytTR[154-242]
- Domain count: 2
- Matched identifier: RROC_0724133
- Positioned domains: Response_reg 19-121 ; Response_reg 19-121 ; LytTR 154-242 ; LytTR 154-242
Cluster members and taxonomy
Representative gene: GCF_003437075#DXC75_RS10030
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_003437155
AssemblyASM343715v1 · Scaffoldhaploid
Genome composition2 338 335 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 28 · HK 11 · RR 16CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key