1 Response_reg#1
3-119 aa · 117 aa · 35.0% of protein
Raw token
Response_reg:3:5.66e-30:119:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD36_RS08925
Response regulator, unclassified
Mediterraneibacter gnavus · GCF_003436535
ClassRRTypeunclassifiedLength334 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003436535#DXD36_RS08925Stable P2CS identifier used across views.
GenomeGCF_003436535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length334 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage193 / 334 aa (57.8%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa334 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
238-277 aa · 40 aa · 12.0% of protein
Raw token
HTH_AraC:238:0.00000000371:277:40:423 HTH_AraC#3
294-329 aa · 36 aa · 10.8% of protein
Raw token
HTH_AraC:294:0.00000122:329:36:42- Raw architecture: Response_reg:3:5.66e-30:119:117:111#HTH_AraC:238:0.00000000371:277:40:42#HTH_AraC:294:0.00000122:329:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003436535::NZ_QSPZ01000014.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3734-6533Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD36_08925RefSeq proteinWP_055169459.1
Context group ID
GCF_003436535::NZ_QSPZ01000014.1::G00005Context members
DXD36_RS08920DXD36_RS08925
Partner locus tags
DXD36_RS08920DXD36_RS08925
Partner old locus tags
DXD36_08920DXD36_08925
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055169459.1Primary protein accession used for annex mappings.
UniProt accessionA0A2N5PSU9Primary UniProt accession resolved in the annex database.
UniProt IDA0A2N5PSU9_MEDGNDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD36_RS08925Primary locus identifier stored in the genes table.
Old locus tagDXD36_08925Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSPZ01000014.1Sequence record reported by the local genomic context database.
Genomic interval5 529-6 533 nt1 005 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 734-6 533 ntGCF_003436535::NZ_QSPZ01000014.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436535::NZ_QSPZ01000014.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSPZ01000014.1All displayed genes belong to this local TCS context.
Neighborhood span3 734-6 533 nt2 800 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 734 nt6 533 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD36_RS08920GCF_003436535#DXD36_RS08920
HKClassic
3 734-5 548 nt · Forward (+)
DXD36_RS08925GCF_003436535#DXD36_RS08925
RRunclassifiedCurrent focus
5 529-6 533 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406655#ARA00_RS12075Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0512994
Simplified PFAM architecture for RROC_0512994
PFAM domain coverage: 187 / 334 aa (56.0%)
1 aa334 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-111] | HTH_18[252-329]
- Domain count: 2
- Matched identifier: RROC_0512994
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; HTH_18 252-329 ; HTH_18 252-329
Cluster members and taxonomy
Representative gene: GCF_001406655#ARA00_RS12075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_003436535
AssemblyASM343653v1 · Scaffoldhaploid
Genome composition3 396 357 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 81 · HK 38 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key