1 Response_reg#1
4-113 aa · 110 aa · 21.5% of protein
Raw token
Response_reg:4:5.02e-30:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD36_RS08260
Response regulator, unclassified
Mediterraneibacter gnavus · GCF_003436535
ClassRRTypeunclassifiedLength512 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003436535#DXD36_RS08260Stable P2CS identifier used across views.
GenomeGCF_003436535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length512 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage184 / 512 aa (35.9%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa512 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
408-449 aa · 42 aa · 8.2% of protein
Raw token
HTH_AraC:408:0.0000000286:449:42:423 HTH_AraC#3
463-494 aa · 32 aa · 6.3% of protein
Raw token
HTH_AraC:463:0.000000164:494:32:42- Raw architecture: Response_reg:4:5.02e-30:113:110:111#HTH_AraC:408:0.0000000286:449:42:42#HTH_AraC:463:0.000000164:494:32:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003436535::NZ_QSPZ01000012.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span33275-36506Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD36_08260RefSeq proteinWP_181974015.1
Context group ID
GCF_003436535::NZ_QSPZ01000012.1::G00002Context members
DXD36_RS08255DXD36_RS08260
Partner locus tags
DXD36_RS08255DXD36_RS08260
Partner old locus tags
DXD36_08255DXD36_08260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_181974015.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD36_RS08260Primary locus identifier stored in the genes table.
Old locus tagDXD36_08260Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSPZ01000012.1Sequence record reported by the local genomic context database.
Genomic interval34 968-36 506 nt1 539 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span33 275-36 506 ntGCF_003436535::NZ_QSPZ01000012.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436535::NZ_QSPZ01000012.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSPZ01000012.1All displayed genes belong to this local TCS context.
Neighborhood span33 275-36 506 nt3 232 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
33 275 nt36 506 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD36_RS08255GCF_003436535#DXD36_RS08255
HKClassic
33 275-34 996 nt · Reverse (-)
DXD36_RS08260GCF_003436535#DXD36_RS08260
RRunclassifiedCurrent focus
34 968-36 506 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436535#DXD36_RS08260The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0143509
Simplified PFAM architecture for RROC_0143509
PFAM domain coverage: 189 / 512 aa (36.9%)
1 aa512 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-113] | HTH_18[421-499]
- Domain count: 2
- Matched identifier: RROC_0143509
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; HTH_18 421-499 ; HTH_18 421-499
Cluster members and taxonomy
Representative gene: GCF_003436535#DXD36_RS08260
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_003436535
AssemblyASM343653v1 · Scaffoldhaploid
Genome composition3 396 357 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 81 · HK 38 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key