1 dCache_1#1
42-221 aa · 180 aa · 31.4% of protein
Raw token
dCache_1:42:0.0000103:221:181:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD36_RS08255
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_003436535
ClassHKTypeClassicLength573 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003436535#DXD36_RS08255Stable P2CS identifier used across views.
GenomeGCF_003436535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length573 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage432 / 573 aa (75.4%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa573 aa
Domain-by-domain annotation4 items
2 HAMP#2
281-347 aa · 67 aa · 11.7% of protein
Raw token
HAMP:281:0.0000000000287:347:67:693 His_kinase#3
362-443 aa · 82 aa · 14.3% of protein
Raw token
His_kinase:362:1.02e-26:443:82:804 HATPase_c#4
460-562 aa · 103 aa · 18.0% of protein
Raw token
HATPase_c:460:0.000000000000176:562:112:109- Raw architecture: dCache_1:42:0.0000103:221:181:195#HAMP:281:0.0000000000287:347:67:69#His_kinase:362:1.02e-26:443:82:80#HATPase_c:460:0.000000000000176:562:112:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003436535::NZ_QSPZ01000012.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span33275-36506Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD36_08255RefSeq proteinWP_117636477.1
Context group ID
GCF_003436535::NZ_QSPZ01000012.1::G00002Context members
DXD36_RS08255DXD36_RS08260
Partner locus tags
DXD36_RS08255DXD36_RS08260
Partner old locus tags
DXD36_08255DXD36_08260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117636477.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD36_RS08255Primary locus identifier stored in the genes table.
Old locus tagDXD36_08255Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSPZ01000012.1Sequence record reported by the local genomic context database.
Genomic interval33 275-34 996 nt1 722 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span33 275-36 506 ntGCF_003436535::NZ_QSPZ01000012.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436535::NZ_QSPZ01000012.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSPZ01000012.1All displayed genes belong to this local TCS context.
Neighborhood span33 275-36 506 nt3 232 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
33 275 nt36 506 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD36_RS08255GCF_003436535#DXD36_RS08255
HKClassicCurrent focus
33 275-34 996 nt · Reverse (-)
DXD36_RS08260GCF_003436535#DXD36_RS08260
RRunclassified
34 968-36 506 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436535#DXD36_RS08255The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1198934
Simplified PFAM architecture for HKOC_1198934
PFAM domain coverage: 232 / 573 aa (40.5%)
1 aa573 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[295-346] | His_kinase[363-441] | HATPase_c[461-561]
- Domain count: 3
- Matched identifier: HKOC_1198934
- Positioned domains: HAMP 295-346 ; His_kinase 363-441 ; HATPase_c 461-561
Cluster members and taxonomy
Representative gene: GCF_003436535#DXD36_RS08255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_003436535
AssemblyASM343653v1 · Scaffoldhaploid
Genome composition3 396 357 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 81 · HK 38 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key