1 Response_reg#1
15-122 aa · 108 aa · 45.0% of protein
Raw token
Response_reg:15:5.87e-36:122:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD37_RS03985
Response regulator OmpR family
Bifidobacterium longum · GCF_003436505
ClassRRTypeOmpRLength240 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003436505#DXD37_RS03985Stable P2CS identifier used across views.
GenomeGCF_003436505Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 240 aa (75.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
164-235 aa · 72 aa · 30.0% of protein
Raw token
Trans_reg_C:164:1.83e-30:235:77:77- Raw architecture: Response_reg:15:5.87e-36:122:109:111#Trans_reg_C:164:1.83e-30:235:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003436505::NZ_QSPY01000005.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span52719-54514Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD37_03990RefSeq proteinWP_117650863.1
Context group ID
GCF_003436505::NZ_QSPY01000005.1::G00008Context members
DXD37_RS03985DXD37_RS03990
Partner locus tags
DXD37_RS03985DXD37_RS03990
Partner old locus tags
DXD37_03990DXD37_03995
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117650863.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD37_RS03985Primary locus identifier stored in the genes table.
Old locus tagDXD37_03990Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSPY01000005.1Sequence record reported by the local genomic context database.
Genomic interval52 719-53 441 nt723 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span52 719-54 514 ntGCF_003436505::NZ_QSPY01000005.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436505::NZ_QSPY01000005.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSPY01000005.1All displayed genes belong to this local TCS context.
Neighborhood span52 719-54 514 nt1 796 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
52 719 nt54 514 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD37_RS03985GCF_003436505#DXD37_RS03985
RROmpRCurrent focus
52 719-53 441 nt · Forward (+)
DXD37_RS03990GCF_003436505#DXD37_RS03990
HKClassic
53 441-54 514 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436505#DXD37_RS03985The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0888248
Simplified PFAM architecture for RROC_0888248
PFAM domain coverage: 180 / 240 aa (75.0%)
1 aa240 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[15-122] | Trans_reg_C[164-235]
- Domain count: 2
- Matched identifier: RROC_0888248
- Positioned domains: Response_reg 15-122 ; Response_reg 15-122 ; Trans_reg_C 164-235 ; Trans_reg_C 164-235
Cluster members and taxonomy
Representative gene: GCF_003436505#DXD37_RS03985
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003436505
AssemblyASM343650v1 · Scaffoldhaploid
Genome composition2 414 802 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 17 · HK 9 · RR 8CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key