1 Response_reg#1
3-107 aa · 105 aa · 47.3% of protein
Raw token
Response_reg:3:2.79e-18:107:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD84_RS06240
Response regulator LytTR family
Dorea formicigenerans · GCF_003436235
ClassRRTypeLytTRLength222 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003436235#DXD84_RS06240Stable P2CS identifier used across views.
GenomeGCF_003436235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 222 aa (75.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-199 aa · 63 aa · 28.4% of protein
Raw token
LytTR:137:0.000000000000621:199:63:98- Raw architecture: Response_reg:3:2.79e-18:107:107:111#LytTR:137:0.000000000000621:199:63:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003436235::NZ_QSOI01000006.1::G00041
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span28928-29596Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD84_06240RefSeq proteinWP_204987873.1
Context group ID
GCF_003436235::NZ_QSOI01000006.1::G00041Context members
DXD84_RS06240
Partner locus tags
DXD84_RS06240
Partner old locus tags
DXD84_06240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_204987873.1Primary protein accession used for annex mappings.
UniProt accessionA0AB35IWU6Primary UniProt accession resolved in the annex database.
UniProt IDA0AB35IWU6_MEDGNDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD84_RS06240Primary locus identifier stored in the genes table.
Old locus tagDXD84_06240Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOI01000006.1Sequence record reported by the local genomic context database.
Genomic interval28 928-29 596 nt669 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span28 928-29 596 ntGCF_003436235::NZ_QSOI01000006.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436235::NZ_QSOI01000006.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOI01000006.1All displayed genes belong to this local TCS context.
Neighborhood span28 928-29 596 nt669 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
28 928 nt29 596 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXD84_RS06240GCF_003436235#DXD84_RS06240
RRLytTRCurrent focus
28 928-29 596 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300745#G4350_RS12475Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1488346
Simplified PFAM architecture for RROC_1488346
PFAM domain coverage: 166 / 225 aa (73.8%)
1 aa225 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[7-116] | LytTR[142-197]
- Domain count: 2
- Matched identifier: RROC_1488346
- Positioned domains: Response_reg 7-116 ; LytTR 142-197
Cluster members and taxonomy
Representative gene: GCF_013300745#G4350_RS12475
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003436235
AssemblyASM343623v1 · Scaffoldhaploid
Genome composition3 002 656 bp · 40,5% GCDorea formicigenerans
Signal transduction countsGenes 88 · HK 48 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key