1 HisKA#1
345-411 aa · 67 aa · 9.3% of protein
Raw token
HisKA:345:4.62e-16:411:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD84_RS06150
Histidine kinase, Hybrid
Dorea formicigenerans · GCF_003436235
ClassHKTypeHybridLength721 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_003436235#DXD84_RS06150Stable P2CS identifier used across views.
GenomeGCF_003436235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length721 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage298 / 721 aa (41.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa721 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
463-576 aa · 114 aa · 15.8% of protein
Raw token
HATPase_c:463:3.6e-27:576:114:1093 Response_reg#3
599-715 aa · 117 aa · 16.2% of protein
Raw token
Response_reg:599:4.81e-29:715:117:111- Raw architecture: HisKA:345:4.62e-16:411:67:64#HATPase_c:463:3.6e-27:576:114:109#Response_reg:599:4.81e-29:715:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_003436235::NZ_QSOI01000006.1::G00039
Group size33 locus tags listed below.
HK / RR3 / 0Counts resolved for the local TCS neighborhood.
Context span719-9120Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD84_06150RefSeq proteinWP_117494828.1
Context group ID
GCF_003436235::NZ_QSOI01000006.1::G00039Context members
DXD84_RS06135DXD84_RS06145DXD84_RS06150
Partner locus tags
DXD84_RS06135DXD84_RS06145DXD84_RS06150
Partner old locus tags
DXD84_06135DXD84_06145DXD84_06150
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117494828.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E5GQR1Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E5GQR1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD84_RS06150Primary locus identifier stored in the genes table.
Old locus tagDXD84_06150Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOI01000006.1Sequence record reported by the local genomic context database.
Genomic interval6 955-9 120 nt2 166 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span719-9 120 ntGCF_003436235::NZ_QSOI01000006.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436235::NZ_QSOI01000006.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOI01000006.1All displayed genes belong to this local TCS context.
Neighborhood span719-9 120 nt8 402 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
719 nt9 120 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
DXD84_RS06135GCF_003436235#DXD84_RS06135
HKHybrid
719-3 610 nt · Reverse (-)
DXD84_RS06145GCF_003436235#DXD84_RS06145
HKHybrid
4 013-6 805 nt · Reverse (-)
DXD84_RS06150GCF_003436235#DXD84_RS06150
HKHybridCurrent focus
6 955-9 120 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436235#DXD84_RS06150The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0730870
Simplified PFAM architecture for HKOC_0730870
PFAM domain coverage: 297 / 721 aa (41.2%)
1 aa721 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[345-411] | HATPase_c[463-575] | Response_reg[599-715]
- Domain count: 3
- Matched identifier: HKOC_0730870
- Positioned domains: HisKA 345-411 ; HATPase_c 463-575 ; Response_reg 599-715
Cluster members and taxonomy
Representative gene: GCF_003436235#DXD84_RS06150
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003436235
AssemblyASM343623v1 · Scaffoldhaploid
Genome composition3 002 656 bp · 40,5% GCDorea formicigenerans
Signal transduction countsGenes 88 · HK 48 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key