1 SBP_bac_3#1
38-254 aa · 217 aa · 23.3% of protein
Raw token
SBP_bac_3:38:2.13e-29:254:227:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD84_RS06145
Histidine kinase, Hybrid
Dorea formicigenerans · GCF_003436235
ClassHKTypeHybridLength930 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_003436235#DXD84_RS06145Stable P2CS identifier used across views.
GenomeGCF_003436235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length930 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage708 / 930 aa (76.1%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa930 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
293-480 aa · 188 aa · 20.2% of protein
Raw token
SBP_bac_3:293:0.0000000000000477:480:200:2243 HisKA#3
551-617 aa · 67 aa · 7.2% of protein
Raw token
HisKA:551:5.54e-16:617:67:644 HATPase_c#4
666-783 aa · 118 aa · 12.7% of protein
Raw token
HATPase_c:666:8.49e-25:783:118:1095 Response_reg#5
805-922 aa · 118 aa · 12.7% of protein
Raw token
Response_reg:805:4.64e-32:922:118:111- Raw architecture: SBP_bac_3:38:2.13e-29:254:227:224#SBP_bac_3:293:0.0000000000000477:480:200:224#HisKA:551:5.54e-16:617:67:64#HATPase_c:666:8.49e-25:783:118:109#Response_reg:805:4.64e-32:922:118:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_003436235::NZ_QSOI01000006.1::G00039
Group size33 locus tags listed below.
HK / RR3 / 0Counts resolved for the local TCS neighborhood.
Context span719-9120Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD84_06145RefSeq proteinWP_181973955.1
Context group ID
GCF_003436235::NZ_QSOI01000006.1::G00039Context members
DXD84_RS06135DXD84_RS06145DXD84_RS06150
Partner locus tags
DXD84_RS06135DXD84_RS06145DXD84_RS06150
Partner old locus tags
DXD84_06135DXD84_06145DXD84_06150
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_181973955.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD84_RS06145Primary locus identifier stored in the genes table.
Old locus tagDXD84_06145Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOI01000006.1Sequence record reported by the local genomic context database.
Genomic interval4 013-6 805 nt2 793 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span719-9 120 ntGCF_003436235::NZ_QSOI01000006.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436235::NZ_QSOI01000006.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOI01000006.1All displayed genes belong to this local TCS context.
Neighborhood span719-9 120 nt8 402 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
719 nt9 120 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
DXD84_RS06135GCF_003436235#DXD84_RS06135
HKHybrid
719-3 610 nt · Reverse (-)
DXD84_RS06145GCF_003436235#DXD84_RS06145
HKHybridCurrent focus
4 013-6 805 nt · Reverse (-)
DXD84_RS06150GCF_003436235#DXD84_RS06150
HKHybrid
6 955-9 120 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436235#DXD84_RS06145The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0353413
Simplified PFAM architecture for HKOC_0353413
PFAM domain coverage: 497 / 930 aa (53.4%)
1 aa930 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[47-244] | HisKA[551-617] | HATPase_c[668-782] | Response_reg[805-921]
- Domain count: 4
- Matched identifier: HKOC_0353413
- Positioned domains: SBP_bac_3 47-244 ; HisKA 551-617 ; HATPase_c 668-782 ; Response_reg 805-921
Cluster members and taxonomy
Representative gene: GCF_003436235#DXD84_RS06145
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003436235
AssemblyASM343623v1 · Scaffoldhaploid
Genome composition3 002 656 bp · 40,5% GCDorea formicigenerans
Signal transduction countsGenes 88 · HK 48 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key