1 HisKA#1
87-148 aa · 62 aa · 20.7% of protein
Raw token
HisKA:87:0.000000000134:148:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD84_RS04945
Histidine kinase, Classic
Dorea formicigenerans · GCF_003436235
ClassHKTypeClassicLength299 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003436235#DXD84_RS04945Stable P2CS identifier used across views.
GenomeGCF_003436235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length299 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 299 aa (54.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa299 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
199-298 aa · 100 aa · 33.4% of protein
Raw token
HATPase_c:199:1.56e-30:298:100:109- Raw architecture: HisKA:87:0.000000000134:148:62:64#HATPase_c:199:1.56e-30:298:100:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003436235::NZ_QSOI01000004.1::G00036
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span216063-217632Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD84_04945RefSeq proteinWP_117494646.1
Context group ID
GCF_003436235::NZ_QSOI01000004.1::G00036Context members
DXD84_RS04945DXD84_RS04950
Partner locus tags
DXD84_RS04945DXD84_RS04950
Partner old locus tags
DXD84_04945DXD84_04950
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117494646.1Primary protein accession used for annex mappings.
UniProt accessionA0A6L8S006Primary UniProt accession resolved in the annex database.
UniProt IDA0A6L8S006_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD84_RS04945Primary locus identifier stored in the genes table.
Old locus tagDXD84_04945Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOI01000004.1Sequence record reported by the local genomic context database.
Genomic interval216 063-216 962 nt900 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span216 063-217 632 ntGCF_003436235::NZ_QSOI01000004.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436235::NZ_QSOI01000004.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOI01000004.1All displayed genes belong to this local TCS context.
Neighborhood span216 063-217 632 nt1 570 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
216 063 nt217 632 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD84_RS04945GCF_003436235#DXD84_RS04945
HKClassicCurrent focus
216 063-216 962 nt · Reverse (-)
DXD84_RS04950GCF_003436235#DXD84_RS04950
RROmpR
216 955-217 632 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436235#DXD84_RS04945The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2887788
Simplified PFAM architecture for HKOC_2887788
PFAM domain coverage: 164 / 299 aa (54.8%)
1 aa299 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[86-148] | HATPase_c[198-298]
- Domain count: 2
- Matched identifier: HKOC_2887788
- Positioned domains: HisKA 86-148 ; HATPase_c 198-298
Cluster members and taxonomy
Representative gene: GCF_003436235#DXD84_RS04945
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003436235
AssemblyASM343623v1 · Scaffoldhaploid
Genome composition3 002 656 bp · 40,5% GCDorea formicigenerans
Signal transduction countsGenes 88 · HK 48 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key