1 HAMP#1
4-56 aa · 53 aa · 17.4% of protein
Raw token
HAMP:4:0.0000268:56:53:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD84_RS04785
Histidine kinase, Classic
Dorea formicigenerans · GCF_003436235
ClassHKTypeClassicLength305 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003436235#DXD84_RS04785Stable P2CS identifier used across views.
GenomeGCF_003436235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length305 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage228 / 305 aa (74.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa305 aa
Domain-by-domain annotation3 items
2 HisKA#2
85-150 aa · 66 aa · 21.6% of protein
Raw token
HisKA:85:0.0000000587:150:66:643 HATPase_c#3
197-305 aa · 109 aa · 35.7% of protein
Raw token
HATPase_c:197:2.28e-31:305:109:109- Raw architecture: HAMP:4:0.0000268:56:53:69#HisKA:85:0.0000000587:150:66:64#HATPase_c:197:2.28e-31:305:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003436235::NZ_QSOI01000004.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span189146-190761Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD84_04785RefSeq proteinWP_117494632.1
Context group ID
GCF_003436235::NZ_QSOI01000004.1::G00034Context members
DXD84_RS04780DXD84_RS04785
Partner locus tags
DXD84_RS04780DXD84_RS04785
Partner old locus tags
DXD84_04780DXD84_04785
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117494632.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4F844Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4F844_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD84_RS04785Primary locus identifier stored in the genes table.
Old locus tagDXD84_04785Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOI01000004.1Sequence record reported by the local genomic context database.
Genomic interval189 844-190 761 nt918 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span189 146-190 761 ntGCF_003436235::NZ_QSOI01000004.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436235::NZ_QSOI01000004.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOI01000004.1All displayed genes belong to this local TCS context.
Neighborhood span189 146-190 761 nt1 616 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
189 146 nt190 761 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD84_RS04780GCF_003436235#DXD84_RS04780
RROmpR
189 146-189 838 nt · Forward (+)
DXD84_RS04785GCF_003436235#DXD84_RS04785
HKClassicCurrent focus
189 844-190 761 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436235#DXD84_RS04785The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2882333
Simplified PFAM architecture for HKOC_2882333
PFAM domain coverage: 172 / 305 aa (56.4%)
1 aa305 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[85-148] | HATPase_c[197-304]
- Domain count: 2
- Matched identifier: HKOC_2882333
- Positioned domains: HisKA 85-148 ; HATPase_c 197-304
Cluster members and taxonomy
Representative gene: GCF_003436235#DXD84_RS04785
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003436235
AssemblyASM343623v1 · Scaffoldhaploid
Genome composition3 002 656 bp · 40,5% GCDorea formicigenerans
Signal transduction countsGenes 88 · HK 48 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key