1 Response_reg#1
4-113 aa · 110 aa · 47.8% of protein
Raw token
Response_reg:4:5.96e-39:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD84_RS04780
Response regulator OmpR family
Dorea formicigenerans · GCF_003436235
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003436235#DXD84_RS04780Stable P2CS identifier used across views.
GenomeGCF_003436235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 230 aa (79.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-226 aa · 73 aa · 31.7% of protein
Raw token
Trans_reg_C:154:4.37e-33:226:73:77- Raw architecture: Response_reg:4:5.96e-39:113:111:111#Trans_reg_C:154:4.37e-33:226:73:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003436235::NZ_QSOI01000004.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span189146-190761Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD84_04780RefSeq proteinWP_015540980.1
Context group ID
GCF_003436235::NZ_QSOI01000004.1::G00034Context members
DXD84_RS04780DXD84_RS04785
Partner locus tags
DXD84_RS04780DXD84_RS04785
Partner old locus tags
DXD84_04780DXD84_04785
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015540980.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4F905Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4F905_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD84_RS04780Primary locus identifier stored in the genes table.
Old locus tagDXD84_04780Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOI01000004.1Sequence record reported by the local genomic context database.
Genomic interval189 146-189 838 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span189 146-190 761 ntGCF_003436235::NZ_QSOI01000004.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436235::NZ_QSOI01000004.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOI01000004.1All displayed genes belong to this local TCS context.
Neighborhood span189 146-190 761 nt1 616 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
189 146 nt190 761 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD84_RS04780GCF_003436235#DXD84_RS04780
RROmpRCurrent focus
189 146-189 838 nt · Forward (+)
DXD84_RS04785GCF_003436235#DXD84_RS04785
HKClassic
189 844-190 761 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210015#CK5_RS02385Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1200589
Simplified PFAM architecture for RROC_1200589
PFAM domain coverage: 183 / 230 aa (79.6%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[153-226]
- Domain count: 2
- Matched identifier: RROC_1200589
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 153-226 ; Trans_reg_C 153-226
Cluster members and taxonomy
Representative gene: GCF_000210015#CK5_RS02385
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003436235
AssemblyASM343623v1 · Scaffoldhaploid
Genome composition3 002 656 bp · 40,5% GCDorea formicigenerans
Signal transduction countsGenes 88 · HK 48 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key