1 Response_reg#1
7-116 aa · 110 aa · 46.6% of protein
Raw token
Response_reg:7:9.96e-37:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD84_RS04395
Response regulator OmpR family
Dorea formicigenerans · GCF_003436235
ClassRRTypeOmpRLength236 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003436235#DXD84_RS04395Stable P2CS identifier used across views.
GenomeGCF_003436235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 236 aa (77.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
160-231 aa · 72 aa · 30.5% of protein
Raw token
Trans_reg_C:160:5.34e-22:231:72:77- Raw architecture: Response_reg:7:9.96e-37:116:111:111#Trans_reg_C:160:5.34e-22:231:72:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003436235::NZ_QSOI01000004.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span109134-110889Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD84_04395RefSeq proteinWP_117494599.1
Context group ID
GCF_003436235::NZ_QSOI01000004.1::G00032Context members
DXD84_RS04390DXD84_RS04395
Partner locus tags
DXD84_RS04390DXD84_RS04395
Partner old locus tags
DXD84_04390DXD84_04395
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117494599.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4MCN2Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4MCN2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed6 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD84_RS04395Primary locus identifier stored in the genes table.
Old locus tagDXD84_04395Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOI01000004.1Sequence record reported by the local genomic context database.
Genomic interval110 179-110 889 nt711 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span109 134-110 889 ntGCF_003436235::NZ_QSOI01000004.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436235::NZ_QSOI01000004.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOI01000004.1All displayed genes belong to this local TCS context.
Neighborhood span109 134-110 889 nt1 756 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
109 134 nt110 889 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD84_RS04390GCF_003436235#DXD84_RS04390
HKClassic
109 134-110 189 nt · Forward (+)
DXD84_RS04395GCF_003436235#DXD84_RS04395
RROmpRCurrent focus
110 179-110 889 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436235#DXD84_RS04395The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0995543
Simplified PFAM architecture for RROC_0995543
PFAM domain coverage: 185 / 236 aa (78.4%)
1 aa236 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-116] | Trans_reg_C[157-231]
- Domain count: 2
- Matched identifier: RROC_0995543
- Positioned domains: Response_reg 7-116 ; Response_reg 7-116 ; Trans_reg_C 157-231 ; Trans_reg_C 157-231
Cluster members and taxonomy
Representative gene: GCF_003436235#DXD84_RS04395
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003436235
AssemblyASM343623v1 · Scaffoldhaploid
Genome composition3 002 656 bp · 40,5% GCDorea formicigenerans
Signal transduction countsGenes 88 · HK 48 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key