1 HisKA#1
120-188 aa · 69 aa · 19.7% of protein
Raw token
HisKA:120:0.000000000000232:188:69:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD84_RS04390
Histidine kinase, Classic
Dorea formicigenerans · GCF_003436235
ClassHKTypeClassicLength351 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003436235#DXD84_RS04390Stable P2CS identifier used across views.
GenomeGCF_003436235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length351 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 351 aa (52.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa351 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
232-345 aa · 114 aa · 32.5% of protein
Raw token
HATPase_c:232:7.39e-26:345:114:109- Raw architecture: HisKA:120:0.000000000000232:188:69:64#HATPase_c:232:7.39e-26:345:114:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003436235::NZ_QSOI01000004.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span109134-110889Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD84_04390RefSeq proteinWP_117494598.1
Context group ID
GCF_003436235::NZ_QSOI01000004.1::G00032Context members
DXD84_RS04390DXD84_RS04395
Partner locus tags
DXD84_RS04390DXD84_RS04395
Partner old locus tags
DXD84_04390DXD84_04395
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117494598.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4MCA9Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4MCA9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD84_RS04390Primary locus identifier stored in the genes table.
Old locus tagDXD84_04390Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOI01000004.1Sequence record reported by the local genomic context database.
Genomic interval109 134-110 189 nt1 056 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span109 134-110 889 ntGCF_003436235::NZ_QSOI01000004.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436235::NZ_QSOI01000004.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOI01000004.1All displayed genes belong to this local TCS context.
Neighborhood span109 134-110 889 nt1 756 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
109 134 nt110 889 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD84_RS04390GCF_003436235#DXD84_RS04390
HKClassicCurrent focus
109 134-110 189 nt · Forward (+)
DXD84_RS04395GCF_003436235#DXD84_RS04395
RROmpR
110 179-110 889 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436235#DXD84_RS04390The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2793740
Simplified PFAM architecture for HKOC_2793740
PFAM domain coverage: 282 / 351 aa (80.3%)
1 aa351 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[8-110] | HisKA[121-187] | HATPase_c[233-344]
- Domain count: 3
- Matched identifier: HKOC_2793740
- Positioned domains: DUF4118 8-110 ; HisKA 121-187 ; HATPase_c 233-344
Cluster members and taxonomy
Representative gene: GCF_003436235#DXD84_RS04390
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003436235
AssemblyASM343623v1 · Scaffoldhaploid
Genome composition3 002 656 bp · 40,5% GCDorea formicigenerans
Signal transduction countsGenes 88 · HK 48 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key