1 Response_reg#1
4-113 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:4:7.11e-36:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD84_RS03355
Response regulator OmpR family
Dorea formicigenerans · GCF_003436235
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003436235#DXD84_RS03355Stable P2CS identifier used across views.
GenomeGCF_003436235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 229 aa (79.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
157-227 aa · 71 aa · 31.0% of protein
Raw token
Trans_reg_C:157:7.24e-30:227:71:77- Raw architecture: Response_reg:4:7.11e-36:113:111:111#Trans_reg_C:157:7.24e-30:227:71:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003436235::NZ_QSOI01000003.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span127371-129549Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD84_03355RefSeq proteinWP_005331920.1
Context group ID
GCF_003436235::NZ_QSOI01000003.1::G00027Context members
DXD84_RS03350DXD84_RS03355
Partner locus tags
DXD84_RS03350DXD84_RS03355
Partner old locus tags
DXD84_03350DXD84_03355
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005331920.1Primary protein accession used for annex mappings.
UniProt accessionB0G4A0Primary UniProt accession resolved in the annex database.
UniProt IDB0G4A0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD84_RS03355Primary locus identifier stored in the genes table.
Old locus tagDXD84_03355Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOI01000003.1Sequence record reported by the local genomic context database.
Genomic interval128 860-129 549 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span127 371-129 549 ntGCF_003436235::NZ_QSOI01000003.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436235::NZ_QSOI01000003.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOI01000003.1All displayed genes belong to this local TCS context.
Neighborhood span127 371-129 549 nt2 179 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
127 371 nt129 549 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD84_RS03350GCF_003436235#DXD84_RS03350
HKClassic
127 371-128 867 nt · Forward (+)
DXD84_RS03355GCF_003436235#DXD84_RS03355
RROmpRCurrent focus
128 860-129 549 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169235#DORFOR_RS05005Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1247019
Simplified PFAM architecture for RROC_1247019
PFAM domain coverage: 183 / 229 aa (79.9%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[155-227]
- Domain count: 2
- Matched identifier: RROC_1247019
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 155-227 ; Trans_reg_C 155-227
Cluster members and taxonomy
Representative gene: GCF_000169235#DORFOR_RS05005
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003436235
AssemblyASM343623v1 · Scaffoldhaploid
Genome composition3 002 656 bp · 40,5% GCDorea formicigenerans
Signal transduction countsGenes 88 · HK 48 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key