1 HisKA#1
659-724 aa · 66 aa · 7.5% of protein
Raw token
HisKA:659:0.0000000000000245:724:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD84_RS03080
Histidine kinase, Classic
Dorea formicigenerans · GCF_003436235
ClassHKTypeClassicLength880 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003436235#DXD84_RS03080Stable P2CS identifier used across views.
GenomeGCF_003436235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length880 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 880 aa (18.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa880 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
771-863 aa · 93 aa · 10.6% of protein
Raw token
HATPase_c:771:0.00000000000708:863:97:109- Raw architecture: HisKA:659:0.0000000000000245:724:66:64#HATPase_c:771:0.00000000000708:863:97:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003436235::NZ_QSOI01000003.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span68446-71835Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD84_03080RefSeq proteinWP_117494412.1
Context group ID
GCF_003436235::NZ_QSOI01000003.1::G00026Context members
DXD84_RS03075DXD84_RS03080
Partner locus tags
DXD84_RS03075DXD84_RS03080
Partner old locus tags
DXD84_03075DXD84_03080
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117494412.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4MB53Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4MB53_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD84_RS03080Primary locus identifier stored in the genes table.
Old locus tagDXD84_03080Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOI01000003.1Sequence record reported by the local genomic context database.
Genomic interval69 193-71 835 nt2 643 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span68 446-71 835 ntGCF_003436235::NZ_QSOI01000003.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436235::NZ_QSOI01000003.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOI01000003.1All displayed genes belong to this local TCS context.
Neighborhood span68 446-71 835 nt3 390 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
68 446 nt71 835 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD84_RS03075GCF_003436235#DXD84_RS03075
RROmpR
68 446-69 141 nt · Forward (+)
DXD84_RS03080GCF_003436235#DXD84_RS03080
HKClassicCurrent focus
69 193-71 835 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436235#DXD84_RS03080The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0447126
Simplified PFAM architecture for HKOC_0447126
PFAM domain coverage: 159 / 880 aa (18.1%)
1 aa880 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[659-724] | HATPase_c[771-863]
- Domain count: 2
- Matched identifier: HKOC_0447126
- Positioned domains: HisKA 659-724 ; HATPase_c 771-863
Cluster members and taxonomy
Representative gene: GCF_003436235#DXD84_RS03080
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003436235
AssemblyASM343623v1 · Scaffoldhaploid
Genome composition3 002 656 bp · 40,5% GCDorea formicigenerans
Signal transduction countsGenes 88 · HK 48 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key