1 HAMP#1
294-363 aa · 70 aa · 11.8% of protein
Raw token
HAMP:294:0.000000000000142:363:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD84_RS02265
Histidine kinase, Classic
Dorea formicigenerans · GCF_003436235
ClassHKTypeClassicLength592 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003436235#DXD84_RS02265Stable P2CS identifier used across views.
GenomeGCF_003436235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length592 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage263 / 592 aa (44.4%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa592 aa
Domain-by-domain annotation3 items
2 His_kinase#2
378-457 aa · 80 aa · 13.5% of protein
Raw token
His_kinase:378:4.72e-33:457:80:803 HATPase_c#3
473-585 aa · 113 aa · 19.1% of protein
Raw token
HATPase_c:473:0.000000000774:585:114:109- Raw architecture: HAMP:294:0.000000000000142:363:70:69#His_kinase:378:4.72e-33:457:80:80#HATPase_c:473:0.000000000774:585:114:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003436235::NZ_QSOI01000002.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span202512-205885Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD84_02265RefSeq proteinWP_117494297.1
Context group ID
GCF_003436235::NZ_QSOI01000002.1::G00018Context members
DXD84_RS02260DXD84_RS02265
Partner locus tags
DXD84_RS02260DXD84_RS02265
Partner old locus tags
DXD84_02260DXD84_02265
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117494297.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4F9H1Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4F9H1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD84_RS02265Primary locus identifier stored in the genes table.
Old locus tagDXD84_02265Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOI01000002.1Sequence record reported by the local genomic context database.
Genomic interval204 107-205 885 nt1 779 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span202 512-205 885 ntGCF_003436235::NZ_QSOI01000002.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436235::NZ_QSOI01000002.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOI01000002.1All displayed genes belong to this local TCS context.
Neighborhood span202 512-205 885 nt3 374 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
202 512 nt205 885 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD84_RS02260GCF_003436235#DXD84_RS02260
RRunclassified
202 512-204 110 nt · Forward (+)
DXD84_RS02265GCF_003436235#DXD84_RS02265
HKClassicCurrent focus
204 107-205 885 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436235#DXD84_RS02265The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1100575
Simplified PFAM architecture for HKOC_1100575
PFAM domain coverage: 245 / 592 aa (41.4%)
1 aa592 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[311-363] | His_kinase[379-455] | HATPase_c[472-586]
- Domain count: 3
- Matched identifier: HKOC_1100575
- Positioned domains: HAMP 311-363 ; His_kinase 379-455 ; HATPase_c 472-586
Cluster members and taxonomy
Representative gene: GCF_003436235#DXD84_RS02265
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003436235
AssemblyASM343623v1 · Scaffoldhaploid
Genome composition3 002 656 bp · 40,5% GCDorea formicigenerans
Signal transduction countsGenes 88 · HK 48 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key