1 Response_reg#1
8-115 aa · 108 aa · 20.3% of protein
Raw token
Response_reg:8:1.58e-24:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD84_RS02260
Response regulator, unclassified
Dorea formicigenerans · GCF_003436235
ClassRRTypeunclassifiedLength532 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003436235#DXD84_RS02260Stable P2CS identifier used across views.
GenomeGCF_003436235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length532 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage182 / 532 aa (34.2%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa532 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
436-477 aa · 42 aa · 7.9% of protein
Raw token
HTH_AraC:436:0.00000125:477:42:423 HTH_AraC#3
495-526 aa · 32 aa · 6.0% of protein
Raw token
HTH_AraC:495:0.0000000498:526:32:42- Raw architecture: Response_reg:8:1.58e-24:115:111:111#HTH_AraC:436:0.00000125:477:42:42#HTH_AraC:495:0.0000000498:526:32:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003436235::NZ_QSOI01000002.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span202512-205885Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD84_02260RefSeq proteinWP_117494296.1
Context group ID
GCF_003436235::NZ_QSOI01000002.1::G00018Context members
DXD84_RS02260DXD84_RS02265
Partner locus tags
DXD84_RS02260DXD84_RS02265
Partner old locus tags
DXD84_02260DXD84_02265
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117494296.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4FA19Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4FA19_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD84_RS02260Primary locus identifier stored in the genes table.
Old locus tagDXD84_02260Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOI01000002.1Sequence record reported by the local genomic context database.
Genomic interval202 512-204 110 nt1 599 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span202 512-205 885 ntGCF_003436235::NZ_QSOI01000002.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436235::NZ_QSOI01000002.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOI01000002.1All displayed genes belong to this local TCS context.
Neighborhood span202 512-205 885 nt3 374 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
202 512 nt205 885 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD84_RS02260GCF_003436235#DXD84_RS02260
RRunclassifiedCurrent focus
202 512-204 110 nt · Forward (+)
DXD84_RS02265GCF_003436235#DXD84_RS02265
HKClassic
204 107-205 885 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436235#DXD84_RS02260The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0108244
Simplified PFAM architecture for RROC_0108244
PFAM domain coverage: 247 / 532 aa (46.4%)
1 aa532 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[7-117] | GGDEF_2[230-287] | HTH_18[451-528]
- Domain count: 3
- Matched identifier: RROC_0108244
- Positioned domains: Response_reg 7-117 ; Response_reg 7-117 ; GGDEF_2 230-287 ; GGDEF_2 230-287 ; HTH_18 451-528 ; HTH_18 451-528
Cluster members and taxonomy
Representative gene: GCF_003436235#DXD84_RS02260
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003436235
AssemblyASM343623v1 · Scaffoldhaploid
Genome composition3 002 656 bp · 40,5% GCDorea formicigenerans
Signal transduction countsGenes 88 · HK 48 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key