1 Response_reg#1
11-124 aa · 114 aa · 52.3% of protein
Raw token
Response_reg:11:1.44e-18:124:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD60_RS06035
Response regulator NarL family
Bifidobacterium adolescentis · GCF_003436185
ClassRRTypeNarLLength218 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003436185#DXD60_RS06035Stable P2CS identifier used across views.
GenomeGCF_003436185Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length218 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 218 aa (77.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa218 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
155-209 aa · 55 aa · 25.2% of protein
Raw token
HTH_LUXR:155:0.00000000000237:209:55:58- Raw architecture: Response_reg:11:1.44e-18:124:115:111#HTH_LUXR:155:0.00000000000237:209:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003436185::NZ_QSPC01000003.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span208127-208783Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD60_06040RefSeq proteinWP_181974085.1
Context group ID
GCF_003436185::NZ_QSPC01000003.1::G00012Context members
DXD60_RS06035
Partner locus tags
DXD60_RS06035
Partner old locus tags
DXD60_06040
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_181974085.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD60_RS06035Primary locus identifier stored in the genes table.
Old locus tagDXD60_06040Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSPC01000003.1Sequence record reported by the local genomic context database.
Genomic interval208 127-208 783 nt657 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span208 127-208 783 ntGCF_003436185::NZ_QSPC01000003.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436185::NZ_QSPC01000003.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSPC01000003.1All displayed genes belong to this local TCS context.
Neighborhood span208 127-208 783 nt657 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
208 127 nt208 783 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXD60_RS06035GCF_003436185#DXD60_RS06035
RRNarLCurrent focus
208 127-208 783 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436185#DXD60_RS06035The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1819847
Simplified PFAM architecture for RROC_1819847
PFAM domain coverage: 169 / 218 aa (77.5%)
1 aa218 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[11-124] | GerE[155-209]
- Domain count: 2
- Matched identifier: RROC_1819847
- Positioned domains: Response_reg 11-124 ; Response_reg 11-124 ; GerE 155-209 ; GerE 155-209
Cluster members and taxonomy
Representative gene: GCF_003436185#DXD60_RS06035
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_003436185
AssemblyASM343618v1 · Scaffoldhaploid
Genome composition2 150 377 bp · 59,0% GCBifidobacterium adolescentis
Signal transduction countsGenes 26 · HK 11 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key