1 HisKA#1
637-702 aa · 66 aa · 7.6% of protein
Raw token
HisKA:637:0.00000000000000937:702:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW125_RS09060
Histidine kinase, Classic
Dorea sp. AM10-31 · GCF_003435815
ClassHKTypeClassicLength864 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435815#DW125_RS09060Stable P2CS identifier used across views.
GenomeGCF_003435815Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length864 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage158 / 864 aa (18.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa864 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
749-840 aa · 92 aa · 10.6% of protein
Raw token
HATPase_c:749:0.0000000000463:840:96:109- Raw architecture: HisKA:637:0.00000000000000937:702:66:64#HATPase_c:749:0.0000000000463:840:96:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435815::NZ_QTUV01000005.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span66284-69616Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW125_09055RefSeq proteinWP_117537925.1
Context group ID
GCF_003435815::NZ_QTUV01000005.1::G00025Context members
DW125_RS09060DW125_RS09065
Partner locus tags
DW125_RS09060DW125_RS09065
Partner old locus tags
DW125_09055DW125_09060
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117537925.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW125_RS09060Primary locus identifier stored in the genes table.
Old locus tagDW125_09055Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTUV01000005.1Sequence record reported by the local genomic context database.
Genomic interval66 284-68 878 nt2 595 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span66 284-69 616 ntGCF_003435815::NZ_QTUV01000005.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435815::NZ_QTUV01000005.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTUV01000005.1All displayed genes belong to this local TCS context.
Neighborhood span66 284-69 616 nt3 333 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
66 284 nt69 616 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW125_RS09060GCF_003435815#DW125_RS09060
HKClassicCurrent focus
66 284-68 878 nt · Reverse (-)
DW125_RS09065GCF_003435815#DW125_RS09065
RROmpR
68 912-69 616 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435815#DW125_RS09060The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0466150
Simplified PFAM architecture for HKOC_0466150
PFAM domain coverage: 157 / 864 aa (18.2%)
1 aa864 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[637-702] | HATPase_c[750-840]
- Domain count: 2
- Matched identifier: HKOC_0466150
- Positioned domains: HisKA 637-702 ; HATPase_c 750-840
Cluster members and taxonomy
Representative gene: GCF_003435815#DW125_RS09060
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 098 · GCF_003435815
AssemblyASM343581v1 · Scaffoldhaploid
Genome composition2 920 802 bp · 41,0% GCDorea sp. AM10-31
Signal transduction countsGenes 62 · HK 32 · RR 29CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key