1 Response_reg#1
1-84 aa · 84 aa · 96.6% of protein
Raw token
Response_reg:1:6.94e-20:84:84:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW642_RS13580
Response regulator, CheY family
Blautia sp. AM23-13AC · GCF_003435675
ClassRRTypeCheYLength87 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003435675#DW642_RS13580Stable P2CS identifier used across views.
GenomeGCF_003435675Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length87 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage84 / 87 aa (96.6%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa87 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:1:6.94e-20:84:84:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003435675::NZ_QTUL01000015.1::G00017
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span14619-14882Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW642_13550RefSeq proteinWP_242856659.1
Context group ID
GCF_003435675::NZ_QTUL01000015.1::G00017Context members
DW642_RS13580
Partner locus tags
DW642_RS13580
Partner old locus tags
DW642_13550
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242856659.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW642_RS13580Primary locus identifier stored in the genes table.
Old locus tagDW642_13550Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTUL01000015.1Sequence record reported by the local genomic context database.
Genomic interval14 619-14 882 nt264 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span14 619-14 882 ntGCF_003435675::NZ_QTUL01000015.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435675::NZ_QTUL01000015.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTUL01000015.1All displayed genes belong to this local TCS context.
Neighborhood span14 619-14 882 nt264 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 619 nt14 882 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW642_RS13580GCF_003435675#DW642_RS13580
RRCheYCurrent focus
14 619-14 882 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435675#DW642_RS13580The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2474699
Simplified PFAM architecture for RROC_2474699
PFAM domain coverage: 83 / 87 aa (95.4%)
1 aa87 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[2-84]
- Domain count: 1
- Matched identifier: RROC_2474699
- Positioned domains: Response_reg 2-84 ; Response_reg 2-84
Cluster members and taxonomy
Representative gene: GCF_003435675#DW642_RS13580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 971 · GCF_003435675
AssemblyASM343567v1 · Scaffoldhaploid
Genome composition3 443 045 bp · 47,5% GCBlautia sp. AM23-13AC
Signal transduction countsGenes 102 · HK 54 · RR 46CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key