1 Response_reg#1
11-121 aa · 111 aa · 47.0% of protein
Raw token
Response_reg:11:8.37e-31:121:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW642_RS12945
Response regulator OmpR family
Blautia sp. AM23-13AC · GCF_003435675
ClassRRTypeOmpRLength236 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435675#DW642_RS12945Stable P2CS identifier used across views.
GenomeGCF_003435675Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 236 aa (79.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-230 aa · 76 aa · 32.2% of protein
Raw token
Trans_reg_C:155:4.01e-24:230:78:77- Raw architecture: Response_reg:11:8.37e-31:121:111:111#Trans_reg_C:155:4.01e-24:230:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435675::NZ_QTUL01000013.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span63615-65353Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW642_12920RefSeq proteinWP_242991192.1
Context group ID
GCF_003435675::NZ_QTUL01000013.1::G00013Context members
DW642_RS12940DW642_RS12945
Partner locus tags
DW642_RS12940DW642_RS12945
Partner old locus tags
DW642_12915DW642_12920
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242991192.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW642_RS12945Primary locus identifier stored in the genes table.
Old locus tagDW642_12920Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTUL01000013.1Sequence record reported by the local genomic context database.
Genomic interval64 643-65 353 nt711 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span63 615-65 353 ntGCF_003435675::NZ_QTUL01000013.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435675::NZ_QTUL01000013.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTUL01000013.1All displayed genes belong to this local TCS context.
Neighborhood span63 615-65 353 nt1 739 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
63 615 nt65 353 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW642_RS12940GCF_003435675#DW642_RS12940
HKClassic
63 615-64 646 nt · Reverse (-)
DW642_RS12945GCF_003435675#DW642_RS12945
RROmpRCurrent focus
64 643-65 353 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435675#DW642_RS12945The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0995535
Simplified PFAM architecture for RROC_0995535
PFAM domain coverage: 185 / 236 aa (78.4%)
1 aa236 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[11-120] | Trans_reg_C[155-229]
- Domain count: 2
- Matched identifier: RROC_0995535
- Positioned domains: Response_reg 11-120 ; Response_reg 11-120 ; Trans_reg_C 155-229 ; Trans_reg_C 155-229
Cluster members and taxonomy
Representative gene: GCF_003435675#DW642_RS12945
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 971 · GCF_003435675
AssemblyASM343567v1 · Scaffoldhaploid
Genome composition3 443 045 bp · 47,5% GCBlautia sp. AM23-13AC
Signal transduction countsGenes 102 · HK 54 · RR 46CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key