1 Response_reg#1
5-114 aa · 110 aa · 44.2% of protein
Raw token
Response_reg:5:6.64e-17:114:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW642_RS09295
Response regulator LytTR family
Blautia sp. AM23-13AC · GCF_003435675
ClassRRTypeLytTRLength249 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003435675#DW642_RS09295Stable P2CS identifier used across views.
GenomeGCF_003435675Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length249 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage201 / 249 aa (80.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa249 aa
Domain-by-domain annotation2 items
2 LytTR#2
146-236 aa · 91 aa · 36.5% of protein
Raw token
LytTR:146:0.000000000000205:236:95:98- Raw architecture: Response_reg:5:6.64e-17:114:114:111#LytTR:146:0.000000000000205:236:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003435675::NZ_QTUL01000007.1::G00049
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span5082-5831Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW642_09285RefSeq proteinWP_117510003.1
Context group ID
GCF_003435675::NZ_QTUL01000007.1::G00049Context members
DW642_RS09295
Partner locus tags
DW642_RS09295
Partner old locus tags
DW642_09285
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117510003.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW642_RS09295Primary locus identifier stored in the genes table.
Old locus tagDW642_09285Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTUL01000007.1Sequence record reported by the local genomic context database.
Genomic interval5 082-5 831 nt750 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 082-5 831 ntGCF_003435675::NZ_QTUL01000007.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435675::NZ_QTUL01000007.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTUL01000007.1All displayed genes belong to this local TCS context.
Neighborhood span5 082-5 831 nt750 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 082 nt5 831 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW642_RS09295GCF_003435675#DW642_RS09295
RRLytTRCurrent focus
5 082-5 831 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435675#DW642_RS09295The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0734461
Simplified PFAM architecture for RROC_0734461
PFAM domain coverage: 201 / 249 aa (80.7%)
1 aa249 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-114] | LytTR[147-236]
- Domain count: 2
- Matched identifier: RROC_0734461
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; LytTR 147-236 ; LytTR 147-236
Cluster members and taxonomy
Representative gene: GCF_003435675#DW642_RS09295
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 971 · GCF_003435675
AssemblyASM343567v1 · Scaffoldhaploid
Genome composition3 443 045 bp · 47,5% GCBlautia sp. AM23-13AC
Signal transduction countsGenes 102 · HK 54 · RR 46CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key