1 Response_reg#1
4-111 aa · 108 aa · 20.5% of protein
Raw token
Response_reg:4:6.67e-24:111:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW642_RS09240
Response regulator, unclassified
Blautia sp. AM23-13AC · GCF_003435675
ClassRRTypeunclassifiedLength527 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003435675#DW642_RS09240Stable P2CS identifier used across views.
GenomeGCF_003435675Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length527 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage145 / 527 aa (27.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa527 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
489-525 aa · 37 aa · 7.0% of protein
Raw token
HTH_AraC:489:0.00000000258:525:37:42- Raw architecture: Response_reg:4:6.67e-24:111:108:111#HTH_AraC:489:0.00000000258:525:37:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003435675::NZ_QTUL01000006.1::G00048
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span190954-192537Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW642_09230RefSeq proteinWP_117509987.1
Context group ID
GCF_003435675::NZ_QTUL01000006.1::G00048Context members
DW642_RS09240
Partner locus tags
DW642_RS09240
Partner old locus tags
DW642_09230
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117509987.1Primary protein accession used for annex mappings.
UniProt accessionA0A938Z943Primary UniProt accession resolved in the annex database.
UniProt IDA0A938Z943_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW642_RS09240Primary locus identifier stored in the genes table.
Old locus tagDW642_09230Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTUL01000006.1Sequence record reported by the local genomic context database.
Genomic interval190 954-192 537 nt1 584 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span190 954-192 537 ntGCF_003435675::NZ_QTUL01000006.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435675::NZ_QTUL01000006.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTUL01000006.1All displayed genes belong to this local TCS context.
Neighborhood span190 954-192 537 nt1 584 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
190 954 nt192 537 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW642_RS09240GCF_003435675#DW642_RS09240
RRunclassifiedCurrent focus
190 954-192 537 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435675#DW642_RS09240The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0116250
Simplified PFAM architecture for RROC_0116250
PFAM domain coverage: 191 / 527 aa (36.2%)
1 aa527 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-114] | HTH_18[447-526]
- Domain count: 2
- Matched identifier: RROC_0116250
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; HTH_18 447-526 ; HTH_18 447-526
Cluster members and taxonomy
Representative gene: GCF_003435675#DW642_RS09240
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 971 · GCF_003435675
AssemblyASM343567v1 · Scaffoldhaploid
Genome composition3 443 045 bp · 47,5% GCBlautia sp. AM23-13AC
Signal transduction countsGenes 102 · HK 54 · RR 46CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key