1 Response_reg#1
4-116 aa · 113 aa · 21.4% of protein
Raw token
Response_reg:4:1.96e-20:116:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW642_RS06840
Response regulator, unclassified
Blautia sp. AM23-13AC · GCF_003435675
ClassRRTypeunclassifiedLength527 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435675#DW642_RS06840Stable P2CS identifier used across views.
GenomeGCF_003435675Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length527 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage189 / 527 aa (35.9%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa527 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
426-467 aa · 42 aa · 8.0% of protein
Raw token
HTH_AraC:426:0.000000000324:467:42:423 HTH_AraC#3
484-517 aa · 34 aa · 6.5% of protein
Raw token
HTH_AraC:484:0.00000024:517:34:42- Raw architecture: Response_reg:4:1.96e-20:116:117:111#HTH_AraC:426:0.000000000324:467:42:42#HTH_AraC:484:0.00000024:517:34:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435675::NZ_QTUL01000004.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span154693-158003Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW642_06840RefSeq proteinWP_117509690.1
Context group ID
GCF_003435675::NZ_QTUL01000004.1::G00040Context members
DW642_RS06840DW642_RS06845
Partner locus tags
DW642_RS06840DW642_RS06845
Partner old locus tags
DW642_06840DW642_06845
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117509690.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW642_RS06840Primary locus identifier stored in the genes table.
Old locus tagDW642_06840Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTUL01000004.1Sequence record reported by the local genomic context database.
Genomic interval154 693-156 276 nt1 584 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span154 693-158 003 ntGCF_003435675::NZ_QTUL01000004.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435675::NZ_QTUL01000004.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTUL01000004.1All displayed genes belong to this local TCS context.
Neighborhood span154 693-158 003 nt3 311 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
154 693 nt158 003 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW642_RS06840GCF_003435675#DW642_RS06840
RRunclassifiedCurrent focus
154 693-156 276 nt · Reverse (-)
DW642_RS06845GCF_003435675#DW642_RS06845
HKClassic
156 273-158 003 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435675#DW642_RS06840The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0116249
Simplified PFAM architecture for RROC_0116249
PFAM domain coverage: 191 / 527 aa (36.2%)
1 aa527 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[439-517]
- Domain count: 2
- Matched identifier: RROC_0116249
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_18 439-517 ; HTH_18 439-517
Cluster members and taxonomy
Representative gene: GCF_003435675#DW642_RS06840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 971 · GCF_003435675
AssemblyASM343567v1 · Scaffoldhaploid
Genome composition3 443 045 bp · 47,5% GCBlautia sp. AM23-13AC
Signal transduction countsGenes 102 · HK 54 · RR 46CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key