1 HAMP#1
194-262 aa · 69 aa · 14.0% of protein
Raw token
HAMP:194:0.000000000324:262:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW642_RS05290
Histidine kinase, Classic
Blautia sp. AM23-13AC · GCF_003435675
ClassHKTypeClassicLength492 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435675#DW642_RS05290Stable P2CS identifier used across views.
GenomeGCF_003435675Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length492 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 492 aa (49.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa492 aa
Domain-by-domain annotation3 items
2 HisKA#2
266-331 aa · 66 aa · 13.4% of protein
Raw token
HisKA:266:0.00000000000719:331:66:643 HATPase_c#3
379-488 aa · 110 aa · 22.4% of protein
Raw token
HATPase_c:379:5.96e-29:488:110:109- Raw architecture: HAMP:194:0.000000000324:262:69:69#HisKA:266:0.00000000000719:331:66:64#HATPase_c:379:5.96e-29:488:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435675::NZ_QTUL01000003.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span115425-117537Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW642_05290RefSeq proteinWP_242991129.1
Context group ID
GCF_003435675::NZ_QTUL01000003.1::G00035Context members
DW642_RS05290DW642_RS05295
Partner locus tags
DW642_RS05290DW642_RS05295
Partner old locus tags
DW642_05290DW642_05295
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242991129.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW642_RS05290Primary locus identifier stored in the genes table.
Old locus tagDW642_05290Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTUL01000003.1Sequence record reported by the local genomic context database.
Genomic interval115 425-116 903 nt1 479 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span115 425-117 537 ntGCF_003435675::NZ_QTUL01000003.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435675::NZ_QTUL01000003.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTUL01000003.1All displayed genes belong to this local TCS context.
Neighborhood span115 425-117 537 nt2 113 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
115 425 nt117 537 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW642_RS05290GCF_003435675#DW642_RS05290
HKClassicCurrent focus
115 425-116 903 nt · Reverse (-)
DW642_RS05295GCF_003435675#DW642_RS05295
RROmpR
116 848-117 537 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435675#DW642_RS05290The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1522302
Simplified PFAM architecture for HKOC_1522302
PFAM domain coverage: 176 / 492 aa (35.8%)
1 aa492 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[266-331] | HATPase_c[379-488]
- Domain count: 2
- Matched identifier: HKOC_1522302
- Positioned domains: HisKA 266-331 ; HATPase_c 379-488
Cluster members and taxonomy
Representative gene: GCF_003435675#DW642_RS05290
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 971 · GCF_003435675
AssemblyASM343567v1 · Scaffoldhaploid
Genome composition3 443 045 bp · 47,5% GCBlautia sp. AM23-13AC
Signal transduction countsGenes 102 · HK 54 · RR 46CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key