1 Response_reg#1
4-116 aa · 113 aa · 46.3% of protein
Raw token
Response_reg:4:1.81e-24:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW642_RS05130
Response regulator, unclassified
Blautia sp. AM23-13AC · GCF_003435675
ClassRRTypeunclassifiedLength244 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435675#DW642_RS05130Stable P2CS identifier used across views.
GenomeGCF_003435675Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length244 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage191 / 244 aa (78.3%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa244 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
148-189 aa · 42 aa · 17.2% of protein
Raw token
HTH_AraC:148:0.0000701:189:42:423 HTH_AraC#3
203-238 aa · 36 aa · 14.8% of protein
Raw token
HTH_AraC:203:0.000000434:238:36:42- Raw architecture: Response_reg:4:1.81e-24:116:113:111#HTH_AraC:148:0.0000701:189:42:42#HTH_AraC:203:0.000000434:238:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435675::NZ_QTUL01000003.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span73696-76099Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW642_05130RefSeq proteinWP_117509489.1
Context group ID
GCF_003435675::NZ_QTUL01000003.1::G00034Context members
DW642_RS05130DW642_RS05135
Partner locus tags
DW642_RS05130DW642_RS05135
Partner old locus tags
DW642_05130DW642_05135
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117509489.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW642_RS05130Primary locus identifier stored in the genes table.
Old locus tagDW642_05130Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTUL01000003.1Sequence record reported by the local genomic context database.
Genomic interval73 696-74 430 nt735 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span73 696-76 099 ntGCF_003435675::NZ_QTUL01000003.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435675::NZ_QTUL01000003.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTUL01000003.1All displayed genes belong to this local TCS context.
Neighborhood span73 696-76 099 nt2 404 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
73 696 nt76 099 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW642_RS05130GCF_003435675#DW642_RS05130
RRunclassifiedCurrent focus
73 696-74 430 nt · Reverse (-)
DW642_RS05135GCF_003435675#DW642_RS05135
HKClassic
74 447-76 099 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435675#DW642_RS05130The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0810594
Simplified PFAM architecture for RROC_0810594
PFAM domain coverage: 187 / 244 aa (76.6%)
1 aa244 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[165-239]
- Domain count: 2
- Matched identifier: RROC_0810594
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_18 165-239 ; HTH_18 165-239
Cluster members and taxonomy
Representative gene: GCF_003435675#DW642_RS05130
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 971 · GCF_003435675
AssemblyASM343567v1 · Scaffoldhaploid
Genome composition3 443 045 bp · 47,5% GCBlautia sp. AM23-13AC
Signal transduction countsGenes 102 · HK 54 · RR 46CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key