1 Response_reg#1
5-99 aa · 95 aa · 41.9% of protein
Raw token
Response_reg:5:0.000000000000196:99:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB93_RS15800
Response regulator LytTR family
Thomasclavelia ramosa · GCF_003435475
ClassRRTypeLytTRLength227 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003435475#DXB93_RS15800Stable P2CS identifier used across views.
GenomeGCF_003435475Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 227 aa (79.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-222 aa · 86 aa · 37.9% of protein
Raw token
LytTR:137:0.0000000000000106:222:92:98- Raw architecture: Response_reg:5:0.000000000000196:99:101:111#LytTR:137:0.0000000000000106:222:92:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003435475::NZ_QUSL01000034.1::G00020
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span11914-12597Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB93_15795RefSeq proteinWP_029481800.1
Context group ID
GCF_003435475::NZ_QUSL01000034.1::G00020Context members
DXB93_RS15800
Partner locus tags
DXB93_RS15800
Partner old locus tags
DXB93_15795
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_029481800.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3E993Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3E993_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB93_RS15800Primary locus identifier stored in the genes table.
Old locus tagDXB93_15795Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUSL01000034.1Sequence record reported by the local genomic context database.
Genomic interval11 914-12 597 nt684 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span11 914-12 597 ntGCF_003435475::NZ_QUSL01000034.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435475::NZ_QUSL01000034.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUSL01000034.1All displayed genes belong to this local TCS context.
Neighborhood span11 914-12 597 nt684 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 914 nt12 597 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXB93_RS15800GCF_003435475#DXB93_RS15800
RRLytTRCurrent focus
11 914-12 597 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435475#DXB93_RS15800The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1366792
Simplified PFAM architecture for RROC_1366792
PFAM domain coverage: 194 / 227 aa (85.5%)
1 aa227 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-107] | LytTR[131-221]
- Domain count: 2
- Matched identifier: RROC_1366792
- Positioned domains: Response_reg 5-107 ; Response_reg 5-107 ; LytTR 131-221 ; LytTR 131-221
Cluster members and taxonomy
Representative gene: GCF_003435475#DXB93_RS15800
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_003435475
AssemblyASM343547v1 · Scaffoldhaploid
Genome composition3 885 077 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 55 · HK 25 · RR 30CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key