1 Response_reg#1
1-60 aa · 60 aa · 36.4% of protein
Raw token
Response_reg:1:1.82e-22:60:61:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB93_RS15750
Response regulator OmpR family
Thomasclavelia ramosa · GCF_003435475
ClassRRTypeOmpRLength165 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003435475#DXB93_RS15750Stable P2CS identifier used across views.
GenomeGCF_003435475Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length165 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage132 / 165 aa (80.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa165 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
93-164 aa · 72 aa · 43.6% of protein
Raw token
Trans_reg_C:93:1.06e-31:164:77:77- Raw architecture: Response_reg:1:1.82e-22:60:61:111#Trans_reg_C:93:1.06e-31:164:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003435475::NZ_QUSL01000034.1::G00019
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span616-1113Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB93_15745RefSeq proteinWP_272482469.1
Context group ID
GCF_003435475::NZ_QUSL01000034.1::G00019Context members
DXB93_RS15750
Partner locus tags
DXB93_RS15750
Partner old locus tags
DXB93_15745
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_272482469.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB93_RS15750Primary locus identifier stored in the genes table.
Old locus tagDXB93_15745Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUSL01000034.1Sequence record reported by the local genomic context database.
Genomic interval616-1 113 nt498 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span616-1 113 ntGCF_003435475::NZ_QUSL01000034.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435475::NZ_QUSL01000034.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUSL01000034.1All displayed genes belong to this local TCS context.
Neighborhood span616-1 113 nt498 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
616 nt1 113 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXB93_RS15750GCF_003435475#DXB93_RS15750
RROmpRCurrent focus
616-1 113 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS14255Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1847663
Simplified PFAM architecture for RROC_1847663
PFAM domain coverage: 181 / 217 aa (83.4%)
1 aa217 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[146-216]
- Domain count: 2
- Matched identifier: RROC_1847663
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; Trans_reg_C 146-216 ; Trans_reg_C 146-216
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS14255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_003435475
AssemblyASM343547v1 · Scaffoldhaploid
Genome composition3 885 077 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 55 · HK 25 · RR 30CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key