1 Response_reg#1
4-113 aa · 110 aa · 52.4% of protein
Raw token
Response_reg:4:0.0000000000000069:113:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB93_RS12140
Response regulator LytTR family
Thomasclavelia ramosa · GCF_003435475
ClassRRTypeLytTRLength210 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003435475#DXB93_RS12140Stable P2CS identifier used across views.
GenomeGCF_003435475Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length210 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 210 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa210 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-200 aa · 62 aa · 29.5% of protein
Raw token
LytTR:139:0.000000628:200:62:98- Raw architecture: Response_reg:4:0.0000000000000069:113:112:111#LytTR:139:0.000000628:200:62:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003435475::NZ_QUSL01000020.1::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span21262-21894Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB93_12140RefSeq proteinWP_233523942.1
Context group ID
GCF_003435475::NZ_QUSL01000020.1::G00013Context members
DXB93_RS12140
Partner locus tags
DXB93_RS12140
Partner old locus tags
DXB93_12140
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_233523942.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB93_RS12140Primary locus identifier stored in the genes table.
Old locus tagDXB93_12140Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUSL01000020.1Sequence record reported by the local genomic context database.
Genomic interval21 262-21 894 nt633 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span21 262-21 894 ntGCF_003435475::NZ_QUSL01000020.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435475::NZ_QUSL01000020.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUSL01000020.1All displayed genes belong to this local TCS context.
Neighborhood span21 262-21 894 nt633 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 262 nt21 894 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXB93_RS12140GCF_003435475#DXB93_RS12140
RRLytTRCurrent focus
21 262-21 894 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435475#DXB93_RS12140The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2024669
Simplified PFAM architecture for RROC_2024669
PFAM domain coverage: 174 / 210 aa (82.9%)
1 aa210 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-116] | LytTR[140-200]
- Domain count: 2
- Matched identifier: RROC_2024669
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; LytTR 140-200 ; LytTR 140-200
Cluster members and taxonomy
Representative gene: GCF_003435475#DXB93_RS12140
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_003435475
AssemblyASM343547v1 · Scaffoldhaploid
Genome composition3 885 077 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 55 · HK 25 · RR 30CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key