1 Response_reg#1
4-112 aa · 109 aa · 50.0% of protein
Raw token
Response_reg:4:4.55e-36:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB93_RS10555
Response regulator OmpR family
Thomasclavelia ramosa · GCF_003435475
ClassRRTypeOmpRLength218 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435475#DXB93_RS10555Stable P2CS identifier used across views.
GenomeGCF_003435475Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length218 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 218 aa (83.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa218 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
143-215 aa · 73 aa · 33.5% of protein
Raw token
Trans_reg_C:143:9.03e-23:215:77:77- Raw architecture: Response_reg:4:4.55e-36:112:111:111#Trans_reg_C:143:9.03e-23:215:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435475::NZ_QUSL01000016.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3085-5180Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB93_10555RefSeq proteinWP_117581639.1
Context group ID
GCF_003435475::NZ_QUSL01000016.1::G00009Context members
DXB93_RS10555DXB93_RS10560
Partner locus tags
DXB93_RS10555DXB93_RS10560
Partner old locus tags
DXB93_10555DXB93_10560
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117581639.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3EC63Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3EC63_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB93_RS10555Primary locus identifier stored in the genes table.
Old locus tagDXB93_10555Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUSL01000016.1Sequence record reported by the local genomic context database.
Genomic interval3 085-3 741 nt657 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 085-5 180 ntGCF_003435475::NZ_QUSL01000016.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435475::NZ_QUSL01000016.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUSL01000016.1All displayed genes belong to this local TCS context.
Neighborhood span3 085-5 180 nt2 096 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 085 nt5 180 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB93_RS10555GCF_003435475#DXB93_RS10555
RROmpRCurrent focus
3 085-3 741 nt · Forward (+)
DXB93_RS10560GCF_003435475#DXB93_RS10560
HKClassic
3 741-5 180 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435475#DXB93_RS10555The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1819846
Simplified PFAM architecture for RROC_1819846
PFAM domain coverage: 181 / 218 aa (83.0%)
1 aa218 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[144-215]
- Domain count: 2
- Matched identifier: RROC_1819846
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 144-215 ; Trans_reg_C 144-215
Cluster members and taxonomy
Representative gene: GCF_003435475#DXB93_RS10555
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_003435475
AssemblyASM343547v1 · Scaffoldhaploid
Genome composition3 885 077 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 55 · HK 25 · RR 30CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key