1 Response_reg#1
4-123 aa · 120 aa · 48.2% of protein
Raw token
Response_reg:4:0.000000191:123:124:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB93_RS10225
Response regulator LytTR family
Thomasclavelia ramosa · GCF_003435475
ClassRRTypeLytTRLength249 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003435475#DXB93_RS10225Stable P2CS identifier used across views.
GenomeGCF_003435475Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length249 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage214 / 249 aa (85.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa249 aa
Domain-by-domain annotation2 items
2 LytTR#2
152-245 aa · 94 aa · 37.8% of protein
Raw token
LytTR:152:0.00000000000000156:245:97:98- Raw architecture: Response_reg:4:0.000000191:123:124:111#LytTR:152:0.00000000000000156:245:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003435475::NZ_QUSL01000015.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span7063-7812Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB93_10225RefSeq proteinWP_199412673.1
Context group ID
GCF_003435475::NZ_QUSL01000015.1::G00008Context members
DXB93_RS10225
Partner locus tags
DXB93_RS10225
Partner old locus tags
DXB93_10225
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_199412673.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW6DH11Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW6DH11_MEDGNDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB93_RS10225Primary locus identifier stored in the genes table.
Old locus tagDXB93_10225Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUSL01000015.1Sequence record reported by the local genomic context database.
Genomic interval7 063-7 812 nt750 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span7 063-7 812 ntGCF_003435475::NZ_QUSL01000015.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435475::NZ_QUSL01000015.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUSL01000015.1All displayed genes belong to this local TCS context.
Neighborhood span7 063-7 812 nt750 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 063 nt7 812 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXB93_RS10225GCF_003435475#DXB93_RS10225
RRLytTRCurrent focus
7 063-7 812 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435475#DXB93_RS10225The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0734460
Simplified PFAM architecture for RROC_0734460
PFAM domain coverage: 212 / 249 aa (85.1%)
1 aa249 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-122] | LytTR[152-244]
- Domain count: 2
- Matched identifier: RROC_0734460
- Positioned domains: Response_reg 4-122 ; Response_reg 4-122 ; LytTR 152-244 ; LytTR 152-244
Cluster members and taxonomy
Representative gene: GCF_003435475#DXB93_RS10225
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_003435475
AssemblyASM343547v1 · Scaffoldhaploid
Genome composition3 885 077 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 55 · HK 25 · RR 30CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key