1 Response_reg#1
5-114 aa · 110 aa · 47.8% of protein
Raw token
Response_reg:5:4.98e-38:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB93_RS09640
Response regulator OmpR family
Thomasclavelia ramosa · GCF_003435475
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435475#DXB93_RS09640Stable P2CS identifier used across views.
GenomeGCF_003435475Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 230 aa (80.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-227 aa · 75 aa · 32.6% of protein
Raw token
Trans_reg_C:153:9.16e-31:227:75:77- Raw architecture: Response_reg:5:4.98e-38:114:111:111#Trans_reg_C:153:9.16e-31:227:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435475::NZ_QUSL01000013.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span50437-52207Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB93_09640RefSeq proteinWP_117581480.1
Context group ID
GCF_003435475::NZ_QUSL01000013.1::G00007Context members
DXB93_RS09635DXB93_RS09640
Partner locus tags
DXB93_RS09635DXB93_RS09640
Partner old locus tags
DXB93_09635DXB93_09640
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117581480.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3ECL6Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3ECL6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB93_RS09640Primary locus identifier stored in the genes table.
Old locus tagDXB93_09640Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUSL01000013.1Sequence record reported by the local genomic context database.
Genomic interval51 515-52 207 nt693 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span50 437-52 207 ntGCF_003435475::NZ_QUSL01000013.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435475::NZ_QUSL01000013.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUSL01000013.1All displayed genes belong to this local TCS context.
Neighborhood span50 437-52 207 nt1 771 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
50 437 nt52 207 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB93_RS09635GCF_003435475#DXB93_RS09635
HKClassic
50 437-51 522 nt · Reverse (-)
DXB93_RS09640GCF_003435475#DXB93_RS09640
RROmpRCurrent focus
51 515-52 207 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435475#DXB93_RS09640The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1211259
Simplified PFAM architecture for RROC_1211259
PFAM domain coverage: 184 / 230 aa (80.0%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[154-228]
- Domain count: 2
- Matched identifier: RROC_1211259
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 154-228 ; Trans_reg_C 154-228
Cluster members and taxonomy
Representative gene: GCF_003435475#DXB93_RS09640
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_003435475
AssemblyASM343547v1 · Scaffoldhaploid
Genome composition3 885 077 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 55 · HK 25 · RR 30CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key