1 HisKA#1
140-203 aa · 64 aa · 17.7% of protein
Raw token
HisKA:140:0.0000000000236:203:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB93_RS09635
Histidine kinase, Classic
Thomasclavelia ramosa · GCF_003435475
ClassHKTypeClassicLength361 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435475#DXB93_RS09635Stable P2CS identifier used across views.
GenomeGCF_003435475Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length361 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 361 aa (47.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa361 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
253-360 aa · 108 aa · 29.9% of protein
Raw token
HATPase_c:253:9.1e-22:360:109:109- Raw architecture: HisKA:140:0.0000000000236:203:64:64#HATPase_c:253:9.1e-22:360:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435475::NZ_QUSL01000013.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span50437-52207Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB93_09635RefSeq proteinWP_008791282.1
Context group ID
GCF_003435475::NZ_QUSL01000013.1::G00007Context members
DXB93_RS09635DXB93_RS09640
Partner locus tags
DXB93_RS09635DXB93_RS09640
Partner old locus tags
DXB93_09635DXB93_09640
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008791282.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3AFD7Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3AFD7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB93_RS09635Primary locus identifier stored in the genes table.
Old locus tagDXB93_09635Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUSL01000013.1Sequence record reported by the local genomic context database.
Genomic interval50 437-51 522 nt1 086 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span50 437-52 207 ntGCF_003435475::NZ_QUSL01000013.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435475::NZ_QUSL01000013.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUSL01000013.1All displayed genes belong to this local TCS context.
Neighborhood span50 437-52 207 nt1 771 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
50 437 nt52 207 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB93_RS09635GCF_003435475#DXB93_RS09635
HKClassicCurrent focus
50 437-51 522 nt · Reverse (-)
DXB93_RS09640GCF_003435475#DXB93_RS09640
RROmpR
51 515-52 207 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS04690Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2740562
Simplified PFAM architecture for HKOC_2740562
PFAM domain coverage: 172 / 361 aa (47.6%)
1 aa361 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[140-203] | HATPase_c[253-360]
- Domain count: 2
- Matched identifier: HKOC_2740562
- Positioned domains: HisKA 140-203 ; HATPase_c 253-360
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS04690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_003435475
AssemblyASM343547v1 · Scaffoldhaploid
Genome composition3 885 077 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 55 · HK 25 · RR 30CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key