1 KdpD#1
23-232 aa · 210 aa · 23.4% of protein
Raw token
KdpD:23:8.1e-135:232:210:210P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB93_RS08815
Histidine kinase, Classic
Thomasclavelia ramosa · GCF_003435475
ClassHKTypeClassicLength896 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_003435475#DXB93_RS08815Stable P2CS identifier used across views.
GenomeGCF_003435475Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
KdpDGAF_3HisKAHATPase_c
Protein length896 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage513 / 896 aa (57.3%)Merged over positioned domains only.
Domain description1 KdpD,1 GAF_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa896 aa
Domain-by-domain annotation4 items
2 GAF_3#2
525-647 aa · 123 aa · 13.7% of protein
Raw token
GAF_3:525:0.0000767:647:128:1293 HisKA#3
668-735 aa · 68 aa · 7.6% of protein
Raw token
HisKA:668:0.0000000000024:735:68:644 HATPase_c#4
780-891 aa · 112 aa · 12.5% of protein
Raw token
HATPase_c:780:2.69e-29:891:112:109- Raw architecture: KdpD:23:8.1e-135:232:210:210#GAF_3:525:0.0000767:647:128:129#HisKA:668:0.0000000000024:735:68:64#HATPase_c:780:2.69e-29:891:112:109
- Domain description: 1 KdpD,1 GAF_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_003435475::NZ_QUSL01000011.1::G00005
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span76013-81438Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB93_08815RefSeq proteinWP_117581368.1
Context group ID
GCF_003435475::NZ_QUSL01000011.1::G00005Context members
DXB93_RS08800DXB93_RS08805DXB93_RS08810DXB93_RS08815
Partner locus tags
DXB93_RS08800DXB93_RS08805DXB93_RS08810DXB93_RS08815
Partner old locus tags
DXB93_08800DXB93_08805DXB93_08810DXB93_08815
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117581368.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3ED59Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3ED59_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB93_RS08815Primary locus identifier stored in the genes table.
Old locus tagDXB93_08815Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUSL01000011.1Sequence record reported by the local genomic context database.
Genomic interval78 748-81 438 nt2 691 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span76 013-81 438 ntGCF_003435475::NZ_QUSL01000011.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435475::NZ_QUSL01000011.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUSL01000011.1All displayed genes belong to this local TCS context.
Neighborhood span76 013-81 438 nt5 426 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
76 013 nt81 438 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
DXB93_RS08800GCF_003435475#DXB93_RS08800
RROmpR
76 013-76 528 nt · Reverse (-)
DXB93_RS08805GCF_003435475#DXB93_RS08805
HKClassic
76 540-78 000 nt · Reverse (-)
DXB93_RS08810GCF_003435475#DXB93_RS08810
RROmpR
78 045-78 755 nt · Reverse (-)
DXB93_RS08815GCF_003435475#DXB93_RS08815
HKClassicCurrent focus
78 748-81 438 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435475#DXB93_RS08815The current gene is the representative for this cluster.
PFAM architectureKdpD + DUF4118 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0413826
Simplified PFAM architecture for HKOC_0413826
PFAM domain coverage: 495 / 896 aa (55.2%)
1 aa896 aa
KdpDDUF4118HisKAHATPase_c
- Simplified architecture: KdpD + DUF4118 + HisKA + HATPase_c
- Raw architecture: KdpD[23-232] | DUF4118[399-504] | HisKA[668-735] | HATPase_c[780-890]
- Domain count: 4
- Matched identifier: HKOC_0413826
- Positioned domains: KdpD 23-232 ; DUF4118 399-504 ; HisKA 668-735 ; HATPase_c 780-890
Cluster members and taxonomy
Representative gene: GCF_003435475#DXB93_RS08815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_003435475
AssemblyASM343547v1 · Scaffoldhaploid
Genome composition3 885 077 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 55 · HK 25 · RR 30CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key