1 Response_reg#1
1-59 aa · 59 aa · 34.5% of protein
Raw token
Response_reg:1:3.77e-19:59:60:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB93_RS08800
Response regulator OmpR family
Thomasclavelia ramosa · GCF_003435475
ClassRRTypeOmpRLength171 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_003435475#DXB93_RS08800Stable P2CS identifier used across views.
GenomeGCF_003435475Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length171 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage136 / 171 aa (79.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa171 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
93-169 aa · 77 aa · 45.0% of protein
Raw token
Trans_reg_C:93:1.92e-26:169:77:77- Raw architecture: Response_reg:1:3.77e-19:59:60:111#Trans_reg_C:93:1.92e-26:169:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_003435475::NZ_QUSL01000011.1::G00005
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span76013-81438Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB93_08800RefSeq proteinWP_233523877.1
Context group ID
GCF_003435475::NZ_QUSL01000011.1::G00005Context members
DXB93_RS08800DXB93_RS08805DXB93_RS08810DXB93_RS08815
Partner locus tags
DXB93_RS08800DXB93_RS08805DXB93_RS08810DXB93_RS08815
Partner old locus tags
DXB93_08800DXB93_08805DXB93_08810DXB93_08815
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_233523877.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB93_RS08800Primary locus identifier stored in the genes table.
Old locus tagDXB93_08800Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUSL01000011.1Sequence record reported by the local genomic context database.
Genomic interval76 013-76 528 nt516 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span76 013-81 438 ntGCF_003435475::NZ_QUSL01000011.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435475::NZ_QUSL01000011.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUSL01000011.1All displayed genes belong to this local TCS context.
Neighborhood span76 013-81 438 nt5 426 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
76 013 nt81 438 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
DXB93_RS08800GCF_003435475#DXB93_RS08800
RROmpRCurrent focus
76 013-76 528 nt · Reverse (-)
DXB93_RS08805GCF_003435475#DXB93_RS08805
HKClassic
76 540-78 000 nt · Reverse (-)
DXB93_RS08810GCF_003435475#DXB93_RS08810
RROmpR
78 045-78 755 nt · Reverse (-)
DXB93_RS08815GCF_003435475#DXB93_RS08815
HKClassic
78 748-81 438 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435475#DXB93_RS08800The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2197126
Simplified PFAM architecture for RROC_2197126
PFAM domain coverage: 136 / 171 aa (79.5%)
1 aa171 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[1-59] | Trans_reg_C[93-169]
- Domain count: 2
- Matched identifier: RROC_2197126
- Positioned domains: Response_reg 1-59 ; Response_reg 1-59 ; Trans_reg_C 93-169 ; Trans_reg_C 93-169
Cluster members and taxonomy
Representative gene: GCF_003435475#DXB93_RS08800
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_003435475
AssemblyASM343547v1 · Scaffoldhaploid
Genome composition3 885 077 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 55 · HK 25 · RR 30CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key