1 Response_reg#1
32-123 aa · 92 aa · 36.4% of protein
Raw token
Response_reg:32:0.00000023:123:92:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB93_RS06180
Response regulator Spo0A family
Thomasclavelia ramosa · GCF_003435475
ClassRRTypeSpo0ALength253 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003435475#DXB93_RS06180Stable P2CS identifier used across views.
GenomeGCF_003435475Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length253 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage193 / 253 aa (76.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa253 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
146-246 aa · 101 aa · 39.9% of protein
Raw token
Spo0A_C:146:1.58e-41:246:104:104- Raw architecture: Response_reg:32:0.00000023:123:92:111#Spo0A_C:146:1.58e-41:246:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003435475::NZ_QUSL01000007.1::G00027
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span28246-29007Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB93_06180RefSeq proteinWP_117580995.1
Context group ID
GCF_003435475::NZ_QUSL01000007.1::G00027Context members
DXB93_RS06180
Partner locus tags
DXB93_RS06180
Partner old locus tags
DXB93_06180
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117580995.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3EEJ7Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3EEJ7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed6 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB93_RS06180Primary locus identifier stored in the genes table.
Old locus tagDXB93_06180Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUSL01000007.1Sequence record reported by the local genomic context database.
Genomic interval28 246-29 007 nt762 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span28 246-29 007 ntGCF_003435475::NZ_QUSL01000007.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435475::NZ_QUSL01000007.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUSL01000007.1All displayed genes belong to this local TCS context.
Neighborhood span28 246-29 007 nt762 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
28 246 nt29 007 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXB93_RS06180GCF_003435475#DXB93_RS06180
RRSpo0ACurrent focus
28 246-29 007 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435475#DXB93_RS06180The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0697241
Simplified PFAM architecture for RROC_0697241
PFAM domain coverage: 210 / 253 aa (83.0%)
1 aa253 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[12-120] | Spo0A_C[146-246]
- Domain count: 2
- Matched identifier: RROC_0697241
- Positioned domains: Response_reg 12-120 ; Response_reg 12-120 ; Spo0A_C 146-246 ; Spo0A_C 146-246
Cluster members and taxonomy
Representative gene: GCF_003435475#DXB93_RS06180
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_003435475
AssemblyASM343547v1 · Scaffoldhaploid
Genome composition3 885 077 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 55 · HK 25 · RR 30CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key