1 Response_reg#1
21-134 aa · 114 aa · 21.2% of protein
Raw token
Response_reg:21:5.97e-30:134:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX31_RS21005
Response regulator, unclassified
Hungatella hathewayi · GCF_003435045
ClassRRTypeunclassifiedLength537 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435045#DWX31_RS21005Stable P2CS identifier used across views.
GenomeGCF_003435045Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length537 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 537 aa (28.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa537 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
497-535 aa · 39 aa · 7.3% of protein
Raw token
HTH_AraC:497:0.0000000582:535:39:42- Raw architecture: Response_reg:21:5.97e-30:134:114:111#HTH_AraC:497:0.0000000582:535:39:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435045::NZ_QTJW01000015.1::G00044
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span67418-70859Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX31_20995RefSeq proteinWP_029466174.1
Context group ID
GCF_003435045::NZ_QTJW01000015.1::G00044Context members
DWX31_RS21000DWX31_RS21005
Partner locus tags
DWX31_RS21000DWX31_RS21005
Partner old locus tags
DWX31_20990DWX31_20995
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_029466174.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DH47Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DH47_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX31_RS21005Primary locus identifier stored in the genes table.
Old locus tagDWX31_20995Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTJW01000015.1Sequence record reported by the local genomic context database.
Genomic interval69 246-70 859 nt1 614 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span67 418-70 859 ntGCF_003435045::NZ_QTJW01000015.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435045::NZ_QTJW01000015.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTJW01000015.1All displayed genes belong to this local TCS context.
Neighborhood span67 418-70 859 nt3 442 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
67 418 nt70 859 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX31_RS21000GCF_003435045#DWX31_RS21000
HKClassic
67 418-69 232 nt · Reverse (-)
DWX31_RS21005GCF_003435045#DWX31_RS21005
RRunclassifiedCurrent focus
69 246-70 859 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS21005The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0096713
Simplified PFAM architecture for RROC_0096713
PFAM domain coverage: 314 / 537 aa (58.5%)
1 aa537 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[21-133] | GGDEF_2[178-300] | HTH_18[458-535]
- Domain count: 3
- Matched identifier: RROC_0096713
- Positioned domains: Response_reg 21-133 ; Response_reg 21-133 ; GGDEF_2 178-300 ; GGDEF_2 178-300 ; HTH_18 458-535 ; HTH_18 458-535
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS21005
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003435045
AssemblyASM343504v1 · Scaffoldhaploid
Genome composition7 421 149 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 276 · HK 134 · RR 138CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key