1 Response_reg#1
4-118 aa · 115 aa · 22.3% of protein
Raw token
Response_reg:4:1.31e-23:118:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX31_RS09450
Response regulator, unclassified
Hungatella hathewayi · GCF_003435045
ClassRRTypeunclassifiedLength516 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435045#DWX31_RS09450Stable P2CS identifier used across views.
GenomeGCF_003435045Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length516 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage194 / 516 aa (37.6%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa516 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
411-452 aa · 42 aa · 8.1% of protein
Raw token
HTH_AraC:411:0.00000000045:452:42:423 HTH_AraC#3
465-501 aa · 37 aa · 7.2% of protein
Raw token
HTH_AraC:465:0.000017:501:37:42- Raw architecture: Response_reg:4:1.31e-23:118:115:111#HTH_AraC:411:0.00000000045:452:42:42#HTH_AraC:465:0.000017:501:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435045::NZ_QTJW01000005.1::G00130
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span325240-328573Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX31_09440RefSeq proteinWP_025531535.1
Context group ID
GCF_003435045::NZ_QTJW01000005.1::G00130Context members
DWX31_RS09445DWX31_RS09450
Partner locus tags
DWX31_RS09445DWX31_RS09450
Partner old locus tags
DWX31_09435DWX31_09440
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025531535.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DR05Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DR05_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX31_RS09450Primary locus identifier stored in the genes table.
Old locus tagDWX31_09440Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTJW01000005.1Sequence record reported by the local genomic context database.
Genomic interval327 023-328 573 nt1 551 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span325 240-328 573 ntGCF_003435045::NZ_QTJW01000005.1::G00130
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435045::NZ_QTJW01000005.1::G00130Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTJW01000005.1All displayed genes belong to this local TCS context.
Neighborhood span325 240-328 573 nt3 334 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
325 240 nt328 573 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX31_RS09445GCF_003435045#DWX31_RS09445
HKClassic
325 240-327 042 nt · Reverse (-)
DWX31_RS09450GCF_003435045#DWX31_RS09450
RRunclassifiedCurrent focus
327 023-328 573 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS09450The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0134580
Simplified PFAM architecture for RROC_0134580
PFAM domain coverage: 193 / 516 aa (37.4%)
1 aa516 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-117] | HTH_18[425-503]
- Domain count: 2
- Matched identifier: RROC_0134580
- Positioned domains: Response_reg 4-117 ; Response_reg 4-117 ; HTH_18 425-503 ; HTH_18 425-503
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS09450
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003435045
AssemblyASM343504v1 · Scaffoldhaploid
Genome composition7 421 149 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 276 · HK 134 · RR 138CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key