1 Response_reg#1
6-118 aa · 113 aa · 22.0% of protein
Raw token
Response_reg:6:1.98e-31:118:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX31_RS07960
Response regulator, unclassified
Hungatella hathewayi · GCF_003435045
ClassRRTypeunclassifiedLength513 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435045#DWX31_RS07960Stable P2CS identifier used across views.
GenomeGCF_003435045Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length513 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage196 / 513 aa (38.2%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa513 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
418-459 aa · 42 aa · 8.2% of protein
Raw token
HTH_AraC:418:0.000000000708:459:42:423 HTH_AraC#3
467-507 aa · 41 aa · 8.0% of protein
Raw token
HTH_AraC:467:0.0000000541:507:41:42- Raw architecture: Response_reg:6:1.98e-31:118:113:111#HTH_AraC:418:0.000000000708:459:42:42#HTH_AraC:467:0.0000000541:507:41:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435045::NZ_QTJW01000005.1::G00125
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span14777-18102Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX31_07950RefSeq proteinWP_025531887.1
Context group ID
GCF_003435045::NZ_QTJW01000005.1::G00125Context members
DWX31_RS07960DWX31_RS07965
Partner locus tags
DWX31_RS07960DWX31_RS07965
Partner old locus tags
DWX31_07950DWX31_07955
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025531887.1Primary protein accession used for annex mappings.
UniProt accessionA0A374P7X6Primary UniProt accession resolved in the annex database.
UniProt IDA0A374P7X6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX31_RS07960Primary locus identifier stored in the genes table.
Old locus tagDWX31_07950Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTJW01000005.1Sequence record reported by the local genomic context database.
Genomic interval14 777-16 318 nt1 542 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span14 777-18 102 ntGCF_003435045::NZ_QTJW01000005.1::G00125
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435045::NZ_QTJW01000005.1::G00125Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTJW01000005.1All displayed genes belong to this local TCS context.
Neighborhood span14 777-18 102 nt3 326 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 777 nt18 102 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX31_RS07960GCF_003435045#DWX31_RS07960
RRunclassifiedCurrent focus
14 777-16 318 nt · Reverse (-)
DWX31_RS07965GCF_003435045#DWX31_RS07965
HKClassic
16 315-18 102 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS07960The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0141632
Simplified PFAM architecture for RROC_0141632
PFAM domain coverage: 317 / 513 aa (61.8%)
1 aa513 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[6-118] | GGDEF_2[155-279] | HTH_18[431-509]
- Domain count: 3
- Matched identifier: RROC_0141632
- Positioned domains: Response_reg 6-118 ; Response_reg 6-118 ; GGDEF_2 155-279 ; GGDEF_2 155-279 ; HTH_18 431-509 ; HTH_18 431-509
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS07960
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003435045
AssemblyASM343504v1 · Scaffoldhaploid
Genome composition7 421 149 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 276 · HK 134 · RR 138CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key