1 Response_reg#1
6-117 aa · 112 aa · 47.3% of protein
Raw token
Response_reg:6:8.16e-21:117:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX31_RS07795
Response regulator LytTR family
Hungatella hathewayi · GCF_003435045
ClassRRTypeLytTRLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003435045#DWX31_RS07795Stable P2CS identifier used across views.
GenomeGCF_003435045Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage196 / 237 aa (82.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-224 aa · 84 aa · 35.4% of protein
Raw token
LytTR:141:3.25e-22:224:90:98- Raw architecture: Response_reg:6:8.16e-21:117:118:111#LytTR:141:3.25e-22:224:90:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003435045::NZ_QTJW01000004.1::G00120
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span376198-376911Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX31_07785RefSeq proteinWP_025529867.1
Context group ID
GCF_003435045::NZ_QTJW01000004.1::G00120Context members
DWX31_RS07795
Partner locus tags
DWX31_RS07795
Partner old locus tags
DWX31_07785
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025529867.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DS02Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DS02_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX31_RS07795Primary locus identifier stored in the genes table.
Old locus tagDWX31_07785Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTJW01000004.1Sequence record reported by the local genomic context database.
Genomic interval376 198-376 911 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span376 198-376 911 ntGCF_003435045::NZ_QTJW01000004.1::G00120
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435045::NZ_QTJW01000004.1::G00120Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTJW01000004.1All displayed genes belong to this local TCS context.
Neighborhood span376 198-376 911 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
376 198 nt376 911 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWX31_RS07795GCF_003435045#DWX31_RS07795
RRLytTRCurrent focus
376 198-376 911 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS07795The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0968413
Simplified PFAM architecture for RROC_0968413
PFAM domain coverage: 196 / 237 aa (82.7%)
1 aa237 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[6-116] | LytTR[141-225]
- Domain count: 2
- Matched identifier: RROC_0968413
- Positioned domains: Response_reg 6-116 ; Response_reg 6-116 ; LytTR 141-225 ; LytTR 141-225
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS07795
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003435045
AssemblyASM343504v1 · Scaffoldhaploid
Genome composition7 421 149 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 276 · HK 134 · RR 138CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key