1 HisKA#1
117-177 aa · 61 aa · 18.2% of protein
Raw token
HisKA:117:0.000000000317:177:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX31_RS06885
Histidine kinase, Classic
Hungatella hathewayi · GCF_003435045
ClassHKTypeClassicLength335 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435045#DWX31_RS06885Stable P2CS identifier used across views.
GenomeGCF_003435045Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length335 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 335 aa (50.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa335 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
228-334 aa · 107 aa · 31.9% of protein
Raw token
HATPase_c:228:7.47e-26:334:108:109- Raw architecture: HisKA:117:0.000000000317:177:61:64#HATPase_c:228:7.47e-26:334:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435045::NZ_QTJW01000004.1::G00114
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span158055-159735Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX31_06880RefSeq proteinWP_025529218.1
Context group ID
GCF_003435045::NZ_QTJW01000004.1::G00114Context members
DWX31_RS06880DWX31_RS06885
Partner locus tags
DWX31_RS06880DWX31_RS06885
Partner old locus tags
DWX31_06875DWX31_06880
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025529218.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DQ88Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DQ88_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX31_RS06885Primary locus identifier stored in the genes table.
Old locus tagDWX31_06880Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTJW01000004.1Sequence record reported by the local genomic context database.
Genomic interval158 728-159 735 nt1 008 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span158 055-159 735 ntGCF_003435045::NZ_QTJW01000004.1::G00114
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435045::NZ_QTJW01000004.1::G00114Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTJW01000004.1All displayed genes belong to this local TCS context.
Neighborhood span158 055-159 735 nt1 681 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
158 055 nt159 735 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX31_RS06880GCF_003435045#DWX31_RS06880
RROmpR
158 055-158 741 nt · Forward (+)
DWX31_RS06885GCF_003435045#DWX31_RS06885
HKClassicCurrent focus
158 728-159 735 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS06885The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2848532
Simplified PFAM architecture for HKOC_2848532
PFAM domain coverage: 169 / 335 aa (50.4%)
1 aa335 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[116-177] | HATPase_c[228-334]
- Domain count: 2
- Matched identifier: HKOC_2848532
- Positioned domains: HisKA 116-177 ; HATPase_c 228-334
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS06885
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003435045
AssemblyASM343504v1 · Scaffoldhaploid
Genome composition7 421 149 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 276 · HK 134 · RR 138CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key