1 HAMP#1
81-151 aa · 71 aa · 19.1% of protein
Raw token
HAMP:81:0.000000000000844:151:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX31_RS04825
Histidine kinase, Classic
Hungatella hathewayi · GCF_003435045
ClassHKTypeClassicLength372 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435045#DWX31_RS04825Stable P2CS identifier used across views.
GenomeGCF_003435045Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length372 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 372 aa (65.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa372 aa
Domain-by-domain annotation3 items
2 HisKA#2
159-221 aa · 63 aa · 16.9% of protein
Raw token
HisKA:159:0.000000000102:221:63:643 HATPase_c#3
264-372 aa · 109 aa · 29.3% of protein
Raw token
HATPase_c:264:7.55e-35:372:109:109- Raw architecture: HAMP:81:0.000000000000844:151:71:69#HisKA:159:0.000000000102:221:63:64#HATPase_c:264:7.55e-35:372:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435045::NZ_QTJW01000003.1::G00095
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span126866-128667Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX31_04820RefSeq proteinWP_034562170.1
Context group ID
GCF_003435045::NZ_QTJW01000003.1::G00095Context members
DWX31_RS04820DWX31_RS04825
Partner locus tags
DWX31_RS04820DWX31_RS04825
Partner old locus tags
DWX31_04815DWX31_04820
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_034562170.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DRQ3Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DRQ3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX31_RS04825Primary locus identifier stored in the genes table.
Old locus tagDWX31_04820Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTJW01000003.1Sequence record reported by the local genomic context database.
Genomic interval127 549-128 667 nt1 119 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span126 866-128 667 ntGCF_003435045::NZ_QTJW01000003.1::G00095
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435045::NZ_QTJW01000003.1::G00095Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTJW01000003.1All displayed genes belong to this local TCS context.
Neighborhood span126 866-128 667 nt1 802 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
126 866 nt128 667 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX31_RS04820GCF_003435045#DWX31_RS04820
RROmpR
126 866-127 552 nt · Forward (+)
DWX31_RS04825GCF_003435045#DWX31_RS04825
HKClassicCurrent focus
127 549-128 667 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS04825The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2671550
Simplified PFAM architecture for HKOC_2671550
PFAM domain coverage: 223 / 372 aa (59.9%)
1 aa372 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[100-151] | HisKA[157-221] | HATPase_c[266-371]
- Domain count: 3
- Matched identifier: HKOC_2671550
- Positioned domains: HAMP 100-151 ; HisKA 157-221 ; HATPase_c 266-371
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS04825
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003435045
AssemblyASM343504v1 · Scaffoldhaploid
Genome composition7 421 149 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 276 · HK 134 · RR 138CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key