1 Response_reg#1
4-111 aa · 108 aa · 20.7% of protein
Raw token
Response_reg:4:8.87e-29:111:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX31_RS03325
Response regulator, unclassified
Hungatella hathewayi · GCF_003435045
ClassRRTypeunclassifiedLength522 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435045#DWX31_RS03325Stable P2CS identifier used across views.
GenomeGCF_003435045Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length522 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage188 / 522 aa (36.0%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa522 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
425-465 aa · 41 aa · 7.9% of protein
Raw token
HTH_AraC:425:0.000000000275:465:41:423 HTH_AraC#3
478-516 aa · 39 aa · 7.5% of protein
Raw token
HTH_AraC:478:0.0000000737:516:39:42- Raw architecture: Response_reg:4:8.87e-29:111:109:111#HTH_AraC:425:0.000000000275:465:41:42#HTH_AraC:478:0.0000000737:516:39:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435045::NZ_QTJW01000002.1::G00072
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span257131-260529Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX31_03325RefSeq proteinWP_029465595.1
Context group ID
GCF_003435045::NZ_QTJW01000002.1::G00072Context members
DWX31_RS03325DWX31_RS03330
Partner locus tags
DWX31_RS03325DWX31_RS03330
Partner old locus tags
DWX31_03325DWX31_03330
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_029465595.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DS24Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DS24_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX31_RS03325Primary locus identifier stored in the genes table.
Old locus tagDWX31_03325Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTJW01000002.1Sequence record reported by the local genomic context database.
Genomic interval257 131-258 699 nt1 569 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span257 131-260 529 ntGCF_003435045::NZ_QTJW01000002.1::G00072
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435045::NZ_QTJW01000002.1::G00072Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTJW01000002.1All displayed genes belong to this local TCS context.
Neighborhood span257 131-260 529 nt3 399 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
257 131 nt260 529 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX31_RS03325GCF_003435045#DWX31_RS03325
RRunclassifiedCurrent focus
257 131-258 699 nt · Forward (+)
DWX31_RS03330GCF_003435045#DWX31_RS03330
HKClassic
258 706-260 529 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS03325The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0123296
Simplified PFAM architecture for RROC_0123296
PFAM domain coverage: 188 / 522 aa (36.0%)
1 aa522 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-113] | HTH_18[439-516]
- Domain count: 2
- Matched identifier: RROC_0123296
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; HTH_18 439-516 ; HTH_18 439-516
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS03325
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003435045
AssemblyASM343504v1 · Scaffoldhaploid
Genome composition7 421 149 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 276 · HK 134 · RR 138CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key