1 dCache_1#1
171-281 aa · 111 aa · 19.1% of protein
Raw token
dCache_1:171:0.0000116:281:116:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX31_RS01630
Histidine kinase, Classic
Hungatella hathewayi · GCF_003435045
ClassHKTypeClassicLength582 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435045#DWX31_RS01630Stable P2CS identifier used across views.
GenomeGCF_003435045Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length582 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage363 / 582 aa (62.4%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa582 aa
Domain-by-domain annotation4 items
2 HAMP#2
298-367 aa · 70 aa · 12.0% of protein
Raw token
HAMP:298:0.0000000995:367:70:693 His_kinase#3
382-461 aa · 80 aa · 13.7% of protein
Raw token
His_kinase:382:9.01e-33:461:80:804 HATPase_c#4
481-582 aa · 102 aa · 17.5% of protein
Raw token
HATPase_c:481:0.00000000000101:582:118:109- Raw architecture: dCache_1:171:0.0000116:281:116:195#HAMP:298:0.0000000995:367:70:69#His_kinase:382:9.01e-33:461:80:80#HATPase_c:481:0.00000000000101:582:118:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435045::NZ_QTJW01000001.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span389665-392970Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX31_01630RefSeq proteinWP_025530056.1
Context group ID
GCF_003435045::NZ_QTJW01000001.1::G00013Context members
DWX31_RS01625DWX31_RS01630
Partner locus tags
DWX31_RS01625DWX31_RS01630
Partner old locus tags
DWX31_01625DWX31_01630
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025530056.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DTG6Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DTG6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX31_RS01630Primary locus identifier stored in the genes table.
Old locus tagDWX31_01630Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTJW01000001.1Sequence record reported by the local genomic context database.
Genomic interval391 222-392 970 nt1 749 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span389 665-392 970 ntGCF_003435045::NZ_QTJW01000001.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435045::NZ_QTJW01000001.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTJW01000001.1All displayed genes belong to this local TCS context.
Neighborhood span389 665-392 970 nt3 306 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
389 665 nt392 970 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX31_RS01625GCF_003435045#DWX31_RS01625
RRunclassified
389 665-391 212 nt · Forward (+)
DWX31_RS01630GCF_003435045#DWX31_RS01630
HKClassicCurrent focus
391 222-392 970 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS01630The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1153333
Simplified PFAM architecture for HKOC_1153333
PFAM domain coverage: 180 / 582 aa (30.9%)
1 aa582 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[382-460] | HATPase_c[480-580]
- Domain count: 2
- Matched identifier: HKOC_1153333
- Positioned domains: His_kinase 382-460 ; HATPase_c 480-580
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS01630
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003435045
AssemblyASM343504v1 · Scaffoldhaploid
Genome composition7 421 149 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 276 · HK 134 · RR 138CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key