1 HAMP#1
285-354 aa · 70 aa · 12.2% of protein
Raw token
HAMP:285:0.0000000000000158:354:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX31_RS01175
Histidine kinase, Classic
Hungatella hathewayi · GCF_003435045
ClassHKTypeClassicLength574 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435045#DWX31_RS01175Stable P2CS identifier used across views.
GenomeGCF_003435045Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length574 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage255 / 574 aa (44.4%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa574 aa
Domain-by-domain annotation3 items
2 His_kinase#2
369-448 aa · 80 aa · 13.9% of protein
Raw token
His_kinase:369:5.35e-30:448:80:803 HATPase_c#3
469-573 aa · 105 aa · 18.3% of protein
Raw token
HATPase_c:469:0.0000000000000581:573:107:109- Raw architecture: HAMP:285:0.0000000000000158:354:70:69#His_kinase:369:5.35e-30:448:80:80#HATPase_c:469:0.0000000000000581:573:107:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435045::NZ_QTJW01000001.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span282301-285700Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX31_01175RefSeq proteinWP_029467510.1
Context group ID
GCF_003435045::NZ_QTJW01000001.1::G00012Context members
DWX31_RS01175DWX31_RS01180
Partner locus tags
DWX31_RS01175DWX31_RS01180
Partner old locus tags
DWX31_01175DWX31_01180
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_029467510.1Primary protein accession used for annex mappings.
UniProt accessionA0A174CL63Primary UniProt accession resolved in the annex database.
UniProt IDA0A174CL63_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX31_RS01175Primary locus identifier stored in the genes table.
Old locus tagDWX31_01175Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTJW01000001.1Sequence record reported by the local genomic context database.
Genomic interval282 301-284 067 nt1 767 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span282 301-285 700 ntGCF_003435045::NZ_QTJW01000001.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435045::NZ_QTJW01000001.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTJW01000001.1All displayed genes belong to this local TCS context.
Neighborhood span282 301-285 700 nt3 400 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
282 301 nt285 700 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX31_RS01175GCF_003435045#DWX31_RS01175
HKClassicCurrent focus
282 301-284 067 nt · Forward (+)
DWX31_RS01180GCF_003435045#DWX31_RS01180
RRunclassified
284 093-285 700 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405675#ARA98_RS09495Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1115306
Simplified PFAM architecture for HKOC_1115306
PFAM domain coverage: 236 / 589 aa (40.1%)
1 aa589 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[318-369] | His_kinase[385-461] | HATPase_c[482-588]
- Domain count: 3
- Matched identifier: HKOC_1115306
- Positioned domains: HAMP 318-369 ; His_kinase 385-461 ; HATPase_c 482-588
Cluster members and taxonomy
Representative gene: GCF_001405675#ARA98_RS09495
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003435045
AssemblyASM343504v1 · Scaffoldhaploid
Genome composition7 421 149 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 276 · HK 134 · RR 138CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key