1 Response_reg#1
7-116 aa · 110 aa · 46.6% of protein
Raw token
Response_reg:7:2.06e-36:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX31_RS00770
Response regulator OmpR family
Hungatella hathewayi · GCF_003435045
ClassRRTypeOmpRLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003435045#DWX31_RS00770Stable P2CS identifier used across views.
GenomeGCF_003435045Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 236 aa (78.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
158-232 aa · 75 aa · 31.8% of protein
Raw token
Trans_reg_C:158:1.57e-33:232:77:77- Raw architecture: Response_reg:7:2.06e-36:116:111:111#Trans_reg_C:158:1.57e-33:232:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003435045::NZ_QTJW01000001.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span178166-178876Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX31_00770RefSeq proteinWP_002601932.1
Context group ID
GCF_003435045::NZ_QTJW01000001.1::G00009Context members
DWX31_RS00770
Partner locus tags
DWX31_RS00770
Partner old locus tags
DWX31_00770
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002601932.1Primary protein accession used for annex mappings.
UniProt accessionA0A2V3YAH4Primary UniProt accession resolved in the annex database.
UniProt IDA0A2V3YAH4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX31_RS00770Primary locus identifier stored in the genes table.
Old locus tagDWX31_00770Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTJW01000001.1Sequence record reported by the local genomic context database.
Genomic interval178 166-178 876 nt711 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span178 166-178 876 ntGCF_003435045::NZ_QTJW01000001.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435045::NZ_QTJW01000001.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTJW01000001.1All displayed genes belong to this local TCS context.
Neighborhood span178 166-178 876 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
178 166 nt178 876 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWX31_RS00770GCF_003435045#DWX31_RS00770
RROmpRCurrent focus
178 166-178 876 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS10665Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0989441
Simplified PFAM architecture for RROC_0989441
PFAM domain coverage: 184 / 236 aa (78.0%)
1 aa236 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-116] | Trans_reg_C[159-232]
- Domain count: 2
- Matched identifier: RROC_0989441
- Positioned domains: Response_reg 7-116 ; Response_reg 7-116 ; Trans_reg_C 159-232 ; Trans_reg_C 159-232
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS10665
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003435045
AssemblyASM343504v1 · Scaffoldhaploid
Genome composition7 421 149 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 276 · HK 134 · RR 138CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key