1 Response_reg#1
81-182 aa · 102 aa · 21.2% of protein
Raw token
Response_reg:81:0.0000172:182:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX31_RS00615
Response regulator, unclassified
Hungatella hathewayi · GCF_003435045
ClassRRTypeunclassifiedLength481 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003435045#DWX31_RS00615Stable P2CS identifier used across views.
GenomeGCF_003435045Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length481 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage102 / 481 aa (21.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa481 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:81:0.0000172:182:106:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003435045::NZ_QTJW01000001.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span140969-142414Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX31_00615RefSeq proteinWP_025529059.1
Context group ID
GCF_003435045::NZ_QTJW01000001.1::G00006Context members
DWX31_RS00615
Partner locus tags
DWX31_RS00615
Partner old locus tags
DWX31_00615
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025529059.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DT48Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DT48_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX31_RS00615Primary locus identifier stored in the genes table.
Old locus tagDWX31_00615Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTJW01000001.1Sequence record reported by the local genomic context database.
Genomic interval140 969-142 414 nt1 446 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span140 969-142 414 ntGCF_003435045::NZ_QTJW01000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435045::NZ_QTJW01000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTJW01000001.1All displayed genes belong to this local TCS context.
Neighborhood span140 969-142 414 nt1 446 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
140 969 nt142 414 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWX31_RS00615GCF_003435045#DWX31_RS00615
RRunclassifiedCurrent focus
140 969-142 414 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS00615The current gene is the representative for this cluster.
PFAM architectureMetallophos + CNP_C_terminal2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0181401
Simplified PFAM architecture for RROC_0181401
PFAM domain coverage: 350 / 481 aa (72.8%)
1 aa481 aa
MetallophosCNP_C_terminal
- Simplified architecture: Metallophos + CNP_C_terminal
- Raw architecture: Metallophos[80-318] | CNP_C_terminal[364-474]
- Domain count: 2
- Matched identifier: RROC_0181401
- Positioned domains: Metallophos 80-318 ; Metallophos 80-318 ; CNP_C_terminal 364-474 ; CNP_C_terminal 364-474
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS00615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003435045
AssemblyASM343504v1 · Scaffoldhaploid
Genome composition7 421 149 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 276 · HK 134 · RR 138CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key